PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0327s0056.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 359aa    MW: 40242.8 Da    PI: 7.8503
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0327s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.52.9e-4189165278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          C v++C++dls++++yhrrhkvCevhsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Kalax.0327s0056.1.p  89 CLVDDCKSDLSNCRDYHRRHKVCEVHSKTPEVTIQGRKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQP 165
                          9*************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.1E-3381150IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.85586163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-3887168IPR004333Transcription factor, SBP-box
PfamPF031104.3E-3089162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDWSSSKGPS WDWPELEQQQ QHSFPANNID IGSGSFSVDL NLGSVIGSSQ TQLGISRSPL  60
PLPSKRARAA AANCSASAVG QQQAATAYCL VDDCKSDLSN CRDYHRRHKV CEVHSKTPEV  120
TIQGRKQRFC QQCSRFHALE EFDEGKRSCR KRLDGHNRRR RKPQPETHLQ QGTYLPNFPG  180
AGMLSFSNPS SHTHSLSSLI SPMGWSGSIN KIEDPYNKQP HLNLLEKQNS VTDYSPSRYR  240
EAQRLTFLQG KHQMNHPEPS DHHVFYDGIA TQAPDSDCAL SLLSRPMLPM HTEINFRNAI  300
PLQPHHHAVL SSRQPAGHFS TLQPTVPGSD VNFHDMFQTG PDESNVKNEP QTLPFYWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-28891621184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145162KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-49SBP family protein