PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0325s0021.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24149.2 Da PI: 6.9539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 37 | 85 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++ ++lg+f+ta+eAa+a++aa+++++g Kalax.0325s0021.1.p 37 FRGVRKRP-WGRYAAEIRDpFK----KTGVWLGTFDTADEAARAYDAAARSFRG 85 8*******.**********662....5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.629 | 36 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 36 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-35 | 36 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.00E-18 | 36 | 93 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-21 | 37 | 94 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 37 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-10 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.9E-10 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSRKYSFPIM RKVKVAAVAG HDHAGPEMRD PESEIRFRGV RKRPWGRYAA EIRDPFKKTG 60 VWLGTFDTAD EAARAYDAAA RSFRGPKART NFPFPSSPPL HPPVTLNPLP PPPLSYHNPA 120 HMFSAQYIHR PASSSMSSTV ETFSGPKLSN PLAALPSTRV LFHQPVPEEG PDCHSDCDSS 180 SSVVNFEEGG AWGVPDLNLP PPMDDADMNC DDLDATALRL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 36 | 93 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022947976.1 | 7e-46 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_022970780.1 | 7e-46 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_022970781.1 | 7e-46 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_023534086.1 | 7e-46 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | O80339 | 3e-30 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9LDE4 | 4e-30 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A0V0HV08 | 7e-47 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | XP_008456400.1 | 2e-44 | (Cucumis melo) | ||||
STRING | XP_004143195.1 | 2e-44 | (Cucumis sativus) | ||||
STRING | XP_004172004.1 | 2e-44 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 9e-21 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0325s0021.1.p |
Publications ? help Back to Top | |||
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