PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0324s0017.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 1291aa MW: 142995 Da PI: 7.1341

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0324s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.2e-08	1052	1093	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e ++d ++G++ +++Ia+++ ++t +c+++++k Kalax.0324s0017.1.p 1052 PWTSDEKETFLDKLVLFGKD-FRKIASYLD-HKTTADCVEFYYK 1093 8***************99.*****.*********98 PP
2	Myb_DNA-binding	25.1	4.2e-08	1208	1250	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE l++avk +G++ ++ +++++ ++ + +ck ++ k+ Kalax.0324s0017.1.p 1208 DWTDEEKHMLLQAVKFYGND-FEMVSEYVK-TKYRDECKAFYSKV 1250 6*****************.****9.********9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.34E-13	1037	1096	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.981	1048	1099	IPR017884	SANT domain
SMART	SM00717	9.8E-8	1049	1097	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-6	1051	1093	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-4	1052	1094	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.007	1204	1255	IPR017884	SANT domain
SMART	SM00717	8.4E-7	1205	1253	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.04E-10	1208	1257	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	1208	1250	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-6	1208	1253	IPR009057	Homeodomain-like
CDD	cd00167	3.51E-5	1209	1251	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1291 aa Download sequence Send to blast
MQFPEPVPWD RKDIYRERRP MKSEPLASSP VASRWRDSSS FSYRGSGPRE FSRRGSADFR 60 RPPSRARQQG DWHMFPEEPS YDYMPSRSCE RMIEDRSYWS SSSRVDGRYR SGKDFYRVRG 120 YPKDWDGYNW QLNSSSSGIS AERPINGSSI FFGGKPCNGF NDIPFERRRN GMLSGFGAER 180 HFNLAPVNTC GRQNNGFAGA LMEKTRNGFS PRHASDRHIC VSPAVSGDKP SLGFSNASVE 240 KTRNGFSGAP VVKTHNRFSP GLAAGRSINL STSVSEDKTS DGISCAPVVT PPNAFPPHIA 300 SDRSNNMSPV VLKPYLTFSD CVGQKIHDGS SDATMEKTDD EFSPSMLSGR SKKLSPSISR 360 DKPKITSSAA PVEKTPDGFF SSSADGDKSC QRRSGTSVEN IYNGLSLSCA SESSYNKSPV 420 ISVDKPFGGV FGASSGKTCD VLAGSAAKNM TRVIVDGMLS SEIHASDCLQ TGSGCPNERV 480 EDSLKYQHYG RIGEVDGLCT VPIHEKENFL GVDWEPLKWT RSGSLSSHVH FGNSRSIPVD 540 SKEAVDESQQ IEGTTLGSPE CESADFITCS GTSEQAATRK KARLGWGQGL AKYEKKIVDD 600 PCSNELQNEI HNPRVGGEFT SPATASATYS SSPDNEYKSF TEGNSSVFSL GDSDNGQSSF 660 QKLDISFITN EVHWLLNLIH SDDQCPTALG SESNNAMCKL LAWKTGILKA VEITDSKMES 720 LESEIESSNS EHRSNFHYPA ASSSLDVNRK TQFNKKSSAC NTSVMPTPLE VDSSEVRDDI 780 DSPGTATSKP LVRSLDAEAT LEVENACLFA KDASPDSHMI VELVPNHGIS CHPVIPCDFH 840 SPEQGSCDPA CLNQDRVDVE EDIRLCKFVF AANKEEAIKA SDELAHLLSK DGTAVVTCQK 900 SPDDLSIRDE IAKRKKMLRF NERAITLKYR SLQQLWKEDA RLLEMQKNRP KSSKRLELGS 960 RTSQYVHLKS NSSIRSRFYS PEESGKLVPS SETISLTSKL LSDCPAKVYR DVLKMPSLIL 1020 DEKEKQMSKT VLYNRLEEDP VAVEKERALI NPWTSDEKET FLDKLVLFGK DFRKIASYLD 1080 HKTTADCVEF YYKNHKSALF ERMRKKPLRF GMQSKPIASG TYLLTSGEKW NQESAAADVL 1140 AGICGSLSSE AISSCVTSSF DQGDVHRQWK HKKVGGKRKR TWTQEVTQSI DETCSGESCG 1200 EMDFSALDWT DEEKHMLLQA VKFYGNDFEM VSEYVKTKYR DECKAFYSKV KKRLGFMKTA 1260 ITNNPPGIRA NSEQGVDVRL PNSLQVDRVV *

Sequence ? help Back to Top

Protein Sequence Length: 1291 aa Download sequence Send to blast

MQFPEPVPWD RKDIYRERRP MKSEPLASSP VASRWRDSSS FSYRGSGPRE FSRRGSADFR  60
RPPSRARQQG DWHMFPEEPS YDYMPSRSCE RMIEDRSYWS SSSRVDGRYR SGKDFYRVRG  120
YPKDWDGYNW QLNSSSSGIS AERPINGSSI FFGGKPCNGF NDIPFERRRN GMLSGFGAER  180
HFNLAPVNTC GRQNNGFAGA LMEKTRNGFS PRHASDRHIC VSPAVSGDKP SLGFSNASVE  240
KTRNGFSGAP VVKTHNRFSP GLAAGRSINL STSVSEDKTS DGISCAPVVT PPNAFPPHIA  300
SDRSNNMSPV VLKPYLTFSD CVGQKIHDGS SDATMEKTDD EFSPSMLSGR SKKLSPSISR  360
DKPKITSSAA PVEKTPDGFF SSSADGDKSC QRRSGTSVEN IYNGLSLSCA SESSYNKSPV  420
ISVDKPFGGV FGASSGKTCD VLAGSAAKNM TRVIVDGMLS SEIHASDCLQ TGSGCPNERV  480
EDSLKYQHYG RIGEVDGLCT VPIHEKENFL GVDWEPLKWT RSGSLSSHVH FGNSRSIPVD  540
SKEAVDESQQ IEGTTLGSPE CESADFITCS GTSEQAATRK KARLGWGQGL AKYEKKIVDD  600
PCSNELQNEI HNPRVGGEFT SPATASATYS SSPDNEYKSF TEGNSSVFSL GDSDNGQSSF  660
QKLDISFITN EVHWLLNLIH SDDQCPTALG SESNNAMCKL LAWKTGILKA VEITDSKMES  720
LESEIESSNS EHRSNFHYPA ASSSLDVNRK TQFNKKSSAC NTSVMPTPLE VDSSEVRDDI  780
DSPGTATSKP LVRSLDAEAT LEVENACLFA KDASPDSHMI VELVPNHGIS CHPVIPCDFH  840
SPEQGSCDPA CLNQDRVDVE EDIRLCKFVF AANKEEAIKA SDELAHLLSK DGTAVVTCQK  900
SPDDLSIRDE IAKRKKMLRF NERAITLKYR SLQQLWKEDA RLLEMQKNRP KSSKRLELGS  960
RTSQYVHLKS NSSIRSRFYS PEESGKLVPS SETISLTSKL LSDCPAKVYR DVLKMPSLIL  1020
DEKEKQMSKT VLYNRLEEDP VAVEKERALI NPWTSDEKET FLDKLVLFGK DFRKIASYLD  1080
HKTTADCVEF YYKNHKSALF ERMRKKPLRF GMQSKPIASG TYLLTSGEKW NQESAAADVL  1140
AGICGSLSSE AISSCVTSSF DQGDVHRQWK HKKVGGKRKR TWTQEVTQSI DETCSGESCG  1200
EMDFSALDWT DEEKHMLLQA VKFYGNDFEM VSEYVKTKYR DECKAFYSKV KKRLGFMKTA  1260
ITNNPPGIRA NSEQGVDVRL PNSLQVDRVV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	6e-70	MYB family protein

Link Out ? help Back to Top
Phytozome	Kalax.0324s0017.1.p