PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0319s0043.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 257aa MW: 28510.6 Da PI: 6.0197 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.3 | 1.3e-54 | 76 | 179 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlr+w+h+eenkrrtl+k+diaaav+rtd Kalax.0319s0043.2.p 76 QLQAFWSNQkleIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPIIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAVNRTD 165 89******9999****************************************************************************** PP NF-YC 88 ifdflvdivprdel 101 ifdflvdi p+++l Kalax.0319s0043.2.p 166 IFDFLVDILPKEDL 179 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.23E-33 | 67 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-22 | 98 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.8E-37 | 99 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDQQSLGQSH MTASGVAAAP VAYVTPPYQH NQLTGPANPG PIFAPAPVYS QAAGQLAPHI 60 AFQQINQQQQ QQLQQQLQAF WSNQKLEIEK VTDFKNHSLP LARIKKIMKA DEDVRMISAE 120 APIIFARACE MFILELTLRA WNHTEENKRR TLQKNDIAAA VNRTDIFDFL VDILPKEDLK 180 DEALASIPRG PLPAGAPDML PPYHYMPPQN MPHLGAPGMI MGEPVMDPSL YAHQPHPYMA 240 PPMWPQAPQQ DQSSSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-58 | 87 | 176 | 6 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024190951.1 | 1e-116 | nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_024190952.1 | 1e-116 | nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_024190953.1 | 1e-116 | nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_024190955.1 | 1e-116 | nuclear transcription factor Y subunit C-9-like | ||||
Refseq | XP_024190956.1 | 1e-116 | nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 2e-82 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2P6R6R9 | 1e-114 | A0A2P6R6R9_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004302444.1 | 1e-113 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 5e-78 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0319s0043.2.p |