PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0316s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 223aa    MW: 24209.2 Da    PI: 10.1491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0316s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-201160255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrdp   g++ r++lg+f+tae+Aa+a++aa+++++g
  Kalax.0316s0018.1.p 11 RFRGVRKRP-WGRYAAEIRDP---GRKSRVWLGTFDTAEDAARAYDAAALEFRG 60
                         69*******.**********8...556************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-391174IPR001471AP2/ERF domain
CDDcd000181.06E-191168No hitNo description
PROSITE profilePS5103224.4341168IPR001471AP2/ERF domain
PfamPF008478.0E-141160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-321169IPR001471AP2/ERF domain
PRINTSPR003678.1E-111223IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-221269IPR016177DNA-binding domain
PRINTSPR003678.1E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAERTAAEEV RFRGVRKRPW GRYAAEIRDP GRKSRVWLGT FDTAEDAARA YDAAALEFRG  60
SKAKTNFPQP HTPEPKSLTT PAAARLKLDK SPSQSSTVES SSPPLGLQLG PPIRPGGVEF  120
QFQPLLSPYS PRHHHQPLVG HKASIFHFDA ALGSKNQPLP SNPLPIRPKA SHVHTKPFHF  180
ESPASDSDSS SAVIDLGANE DPDVKPKRGL QGIDLNLPPT EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21572876Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-25erf domain protein 9