PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0316s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 180aa    MW: 20540.6 Da    PI: 6.6209
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0316s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.28.4e-4297173177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +Cqve+C++d+s ak+yhrrhkvCe+h+ka+ ++v+gl+qrfCqqCsrfh +sefDe+krsCrrrLa+hn+rrrk++
  Kalax.0316s0013.1.p  97 ICQVENCTTDMSGAKQYHRRHKVCEFHAKAQIAVVAGLQQRFCQQCSRFHLVSEFDESKRSCRRRLAGHNQRRRKSS 173
                          5**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-3393159IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7195172IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-3996176IPR004333Transcription factor, SBP-box
PfamPF031102.6E-3198171IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDRRRVERAR RSFKAEPVFD EDEELAEGED EADDDEDEDY DVEALLNMRP GEFVYGRRSV  60
SSAPTGHGAD GSSSSSTGWM PVPQHQLPPR TQQPLYICQV ENCTTDMSGA KQYHRRHKVC  120
EFHAKAQIAV VAGLQQRFCQ QCSRFHLVSE FDESKRSCRR RLAGHNQRRR KSSYDYPAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-3595171884squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171QRRRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057392.16e-44PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A059C8J51e-42A0A059C8J5_EUCGR; Squamosa promoter-binding-like protein
STRINGXP_010057392.12e-43(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.19e-42squamosa promoter binding protein-like 3