PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0316s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 275aa MW: 29231.8 Da PI: 10.7418

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0316s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.7	1.1e-32	28	82	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds+ tkfCyynnysl+qPr++CkaCrr+WtkGG rnvPvGg+ r+n++ Kalax.0316s0008.1.p 28 EQCPRCDSRSTKFCYYNNYSLTQPRHYCKACRRHWTKGGVCRNVPVGGAIRRNNR 82 68*************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-17	27	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.776	28	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-28	28	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDINLNQNNN LGAGDVDDQV GHGDQLGEQC PRCDSRSTKF CYYNNYSLTQ PRHYCKACRR 60 HWTKGGVCRN VPVGGAIRRN NRGARAGPAR DPLNPVVAPR APRRRGRGAN AAAVAALAGR 120 SVAMSGRVAA VQSDRGRRRI ISSNRTNLLG PLGPNFPSMG TNFQNPTDAR FSVFRRTMSA 180 LCPLPLLATS ASAAMNASNL KLLQEFSAAN KIFLNENVSA GFRNFLCGHN GAIGSGSSDG 240 SGSGEPPALN DMNVANTHWT DLPDFSPPPP PSFA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-22	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Kalax.0316s0008.1.p