PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0310s0067.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 647aa    MW: 70738.6 Da    PI: 5.3993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0310s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30375433259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Kalax.0310s0067.1.p 375 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 433
                          699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109369435IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-30371435IPR003657WRKY domain
SuperFamilySSF1182904.97E-26372435IPR003657WRKY domain
SMARTSM007741.4E-37374434IPR003657WRKY domain
PfamPF031061.6E-25376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MCSYIGMCSS NHSSFYGLPR QGNGVVEDDQ EWHHQGDLAY MVGSVSGART RLFSDSSSNW  60
TQPQHLTTDN NDSIITDHQV LLTAAAQENY PFFTFQRDQL QQPAGCFVCP SGHPSDVGDF  120
GGDPFSSIMI RDPLLRDDDM MIMRMNCSSN NHVYYSNNSN ASNNTANSSL PTTANSMMLM  180
ITKSKGFLAD AAAGSESSHL FCSSSATEDI SSIIPYSSSC RTIGDHELQE ATQCHEPAAA  240
TTTTSSMISR PNSVVFSQTL QISPDLVSQA PLPAPPSTDN KLPISAPHEE TLPLTKLAPA  300
SSSLFAVFGG SGDFDTSTNR VLDKIRTANT DTETLHISPP RNTAIKRRKS LSKKVVCIPA  360
PAPVNSRPSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN  420
MLVITYTSEH NHPWPTQRNA LAGSTRSQPS KNDISTYPGS NTSQAGTSLL QQHNKCNNME  480
ENEKHMGDEP ADANQMISRH INNEKVTTTS GLVVVMSSPS IAASDTSIKE ELLGDDDHVV  540
GDQNDSNNQQ DRDDDCDASH QLYPTAGATY KYHSNDDDEH WCSDKIYRPS IGDLHVDGNY  600
QQAPVEQSQD DFFADLGEIA RKNAFSYLDW PSPEHKTAST GPQHDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24349436280Disease resistance protein RRS1
5w3x_D3e-24349436280Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-64WRKY DNA-binding protein 35