PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0310s0050.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARF | ||||||||
Protein Properties | Length: 909aa MW: 100724 Da PI: 6.7463 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Kalax.0310s0050.4.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Kalax.0310s0050.4.p 215 --WNDKNQLLLGIRRA 228 ..7888889****997 PP | |||||||
2 | Auxin_resp | 121.1 | 8.6e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sd+dpvrWpnS+Wrs+k Kalax.0310s0050.4.p 253 AAHAASTNSRFNIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDSDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-48 | 113 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-21 | 126 | 227 | No hit | No description |
SMART | SM01019 | 3.9E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.52 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.4E-8 | 768 | 864 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.56E-7 | 769 | 850 | No hit | No description |
PROSITE profile | PS51745 | 24.319 | 775 | 859 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence Send to blast |
MRLSSAGFSP QPQEGEKRVL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDP YLPADFGAPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAK DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRASR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAASTN SRFNIFYNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DSDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP FRLKRPWPAG LPSLNGFKEE DLGMNSPLMW LRGDNGQTHN FQGMGANPWM 420 QMQPRMDAML GLQSDMYQAM AAAAFQEMRA VDPTKQAPPP NLLQFQQPQS VGNAPACLIP 480 PQMLNQAQAQ LSYLQSLQES QAQAQMIAQS QARSQSQSHS HSQSHSQSHS VQTSLIQGQL 540 QHQSSFNSHQ GQQDQRQPQR QQMQSIDPQR MPNMVSNIPQ YVSNAQSQSP AMQPVSSLCQ 600 QQSFTGSDGN LVSVSSPIVS PLQSLLGSYT TDESPHLFSL PRNAAPVVSS SDWPSKRVAL 660 ERDPHPHLPS PGSQALLSQL EQQLGESQVN MLHNNVTLPP FPGRECSIDQ NGISNLRGVG 720 GDCESSSMPF ASSSFMSNSG SDFTLNPTMT PSSCIDESGF LHSPENVTEA NALNKTFVKV 780 YKSGSFGRSL DMAKFSSYQE LRSELARMFG LEGQLEDPKR SGWQLVFVDR ENDVLLLGDD 840 PWPEFVNSVW CIKILSPQEV QQMGKRGLEL LNSVPIQRLS SNGCEEYSSR QESRNLSSGI 900 TAVGSLEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 13 | 357 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021595218.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A2C9UGD0 | 0.0 | A0A2C9UGD0_MANES; Auxin response factor | ||||
STRING | cassava4.1_001357m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0310s0050.4.p |
Publications ? help Back to Top | |||
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