PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0309s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 259aa    MW: 28317.4 Da    PI: 8.7989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0309s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.1e-1757106255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa+a++ a++ l+g
  Kalax.0309s0039.1.p  57 RFLGVRQRP-SGRWVAEIKDTS---QKLRLWLGTFDKAEEAAAAYDSAARLLRG 106
                          678******.7*********42...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-1756115No hitNo description
PROSITE profilePS5103219.94157114IPR001471AP2/ERF domain
SMARTSM003801.5E-3257120IPR001471AP2/ERF domain
PfamPF008471.8E-1058106IPR001471AP2/ERF domain
PRINTSPR003678.6E-75869IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-1958115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-2858114IPR001471AP2/ERF domain
PRINTSPR003678.6E-78096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDSTKAACGD YQPHSRQPAT STCHIFSASK AHPFEEAKHS SNLCKRSGIN KGLIKTRFLG  60
VRQRPSGRWV AEIKDTSQKL RLWLGTFDKA EEAAAAYDSA ARLLRGRNAK TNFPVGHGVM  120
GTQENCSLLR KNPRLYNLLQ HAVLKNQARS RSVSTWRCPS TSSNQGRYNE TETGSTVVFD  180
TLVEETINAC GSSLSDQNND RALNINDFVF PSSCSSSSKV YSSVVVAPSF STCFNEEDRP  240
LEEKGSYSTE CGTSQGAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13571191481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393384.33e-62ethylene-responsive transcription factor RAP2-11-like
TrEMBLF6GTG51e-59F6GTG5_VITVI; Uncharacterized protein
STRINGVIT_17s0000g04480.t012e-60(Vitis vinifera)
STRINGXP_008393384.17e-61(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-19related to AP2 11