PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0308s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GeBP
Protein Properties Length: 374aa    MW: 41686.8 Da    PI: 5.588
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0308s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573994.4e-31139231597
               DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                          rlws eDe+++L G++d+k++tg++p +++ afy+++k+s+++ v +sql +Kir+LK+K++ + +k ++g+ p+f ++h+ +++e+s+k
  Kalax.0308s0001.1.p 139 RLWSPEDELMILTGMLDYKENTGVDPNSNLLAFYNYIKGSLNASVDQSQLKNKIRKLKDKYRANAHKEATGQTPVFVRSHEAEAYEHSRK 228
                          9***************************************************************************************** PP

               DUF573  95 iWg 97 
                          +Wg
  Kalax.0308s0001.1.p 229 LWG 231
                          **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-26139231IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPRNRLPASV NPPDESQSEE DGDEVGQADG AAGNRHEDKS DEEAESEGDS SSVKTMSQVR  60
GLEKDESDGD SGNTFPSPTA SDFVIKQNLR PEMKKRPPPD SDLKEVNKKK MSKKNNGFGV  120
GAEDDDKGKK SEKSGGGLRL WSPEDELMIL TGMLDYKENT GVDPNSNLLA FYNYIKGSLN  180
ASVDQSQLKN KIRKLKDKYR ANAHKEATGQ TPVFVRSHEA EAYEHSRKLW GDQTMSRGPQ  240
LTKSKPKREN EFGIVQNELE SVLALPVTQL EVDTKIVKGC SDKLVSRAGK HVPKMMHLDE  300
ADLKTKYATI SMPSMIDNFM VKKGLELIEK SKLDDLNEKW NKYQIDAAEL YVKRLELEQE  360
HIKLIGEALK GDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-20DNA-binding storekeeper protein-related transcriptional regulator