PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0307s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 401aa MW: 44813.4 Da PI: 5.9169 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.4e-08 | 331 | 376 | 9 | 54 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++ql++ + k +yp++e++++L +++gL+ +q+ +WF N+R + Kalax.0307s0033.1.p 331 TSQLKAWWKSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 376 567777777777889*****************************87 PP | |||||||
2 | ELK | 29.2 | 2e-10 | 297 | 318 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+ +++++++E++ Kalax.0307s0033.1.p 297 ELKHELKNGYKDKIVDIREEIL 318 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.3E-19 | 134 | 178 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.3E-17 | 136 | 177 | IPR005540 | KNOX1 |
SMART | SM01256 | 7.2E-26 | 186 | 241 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-18 | 192 | 240 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.6E-4 | 297 | 318 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.69 | 297 | 317 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.2E-5 | 297 | 318 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.645 | 317 | 380 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-15 | 319 | 385 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-10 | 319 | 384 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.24E-11 | 320 | 379 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-25 | 324 | 382 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.4E-18 | 337 | 376 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MAYQNHPAHP MELQHLADQQ LPEGSGGGGG GSGLPGIYST REDKISEASG GGAPTWLNSA 60 VVQQHDNRYT ESNFLHLQTN SGSSNSPTAA NRFMTPSDDS DKYRRGGSNR VNDRYGKDED 120 VANNEYEAEN WENARYKAEV LSHPLYEQLL SAHVSCLRIA TPVDQLPRID AQLAQSQSVV 180 AKYLAVGAGN LDDKELDQFM TNYVLLLCSF KEQLQQHVRV HAMEAVMACW ELEQSLQTLT 240 GVSPGEGTGE TMSDDEDNHM DSNTLFDGSL DSPDSMGFGP LILTDSERSL MERVRQELKH 300 ELKNGYKDKI VDIREEILRK RRAGKLPGDT TSQLKAWWKS HSKWPYPTEE DKARLVQETG 360 LQLKQINNWF INQRKRNWHS NSSSSNSSKS KRKSNAGETR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU272789 | 0.0 | EU272789.1 Kalanchoe x houghtonii class 1 knox protein (KN3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656543.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 13 isoform X2 | ||||
Swissprot | P48001 | 1e-166 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | B1P381 | 0.0 | B1P381_9MAGN; Class 1 knox protein | ||||
STRING | VIT_11s0118g00800.t01 | 1e-177 | (Vitis vinifera) | ||||
STRING | GSMUA_Achr7P05170_001 | 1e-178 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-152 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0307s0033.1.p |
Publications ? help Back to Top | |||
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