PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0306s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 627aa    MW: 69493.3 Da    PI: 7.2238
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0306s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.9e-16310369155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Kalax.0306s0026.1.p 310 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 369
                          78*******************988886678446*************************98 PP
2AP243.29.5e-14412463155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+ ++ a+ k++g
  Kalax.0306s0026.1.p 412 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAESYDIAAIKFRG 463
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-16310379IPR016177DNA-binding domain
PfamPF008471.1E-12310369IPR001471AP2/ERF domain
CDDcd000183.69E-22310378No hitNo description
Gene3DG3DSA:3.30.730.105.7E-16311378IPR001471AP2/ERF domain
PROSITE profilePS5103219.137311377IPR001471AP2/ERF domain
SMARTSM003802.1E-29311383IPR001471AP2/ERF domain
PRINTSPR003672.1E-5312323IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-16412472IPR016177DNA-binding domain
PfamPF008471.1E-8412463IPR001471AP2/ERF domain
CDDcd000181.92E-24412473No hitNo description
Gene3DG3DSA:3.30.730.106.6E-17413471IPR001471AP2/ERF domain
SMARTSM003801.9E-33413477IPR001471AP2/ERF domain
PROSITE profilePS5103218.624413471IPR001471AP2/ERF domain
PRINTSPR003672.1E-5453473IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MKCSMSNDNT STAPNINHSS WLGFSLAPNM TSQLPLHSHH HHQPMPCAPP TLPSSYFHSL  60
PNLDASRTCY GHQDGDYSSG VAAMPLNSDG SLCIMGATRS TVSQVTAPAP APKLEDFFGG  120
GTMGSHQTMG SHQCEANDRE AMALSLDSIY YQQQTTDQET SNLQFLINLQ DGIRPQQTEI  180
QHYPLHYYNY MTHDSFITTQ DDKIKETHDD TCSIQLPSSL GSDFYYGLKN CSADNAMGDK  240
VSHVGFGDLQ ALTLSMSPGS QSSNASSSQR VPHPAMEPLG LDSKKRGVEK VNQKQIVHRK  300
SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY DMEEKAARAY  360
DLAALKYWGS STHINFPVEN YQQELEVMKN MSRQEYVAHL RRKSSGFSRG ASIYRGVTRH  420
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AESYDIAAIK FRGVSAVTNF DITRYNVEQI  480
MESSTLLPSE QARRSNVPEP VVTADASNQD QRLINTESPS IASLGSQNNS ESMSLHQMPP  540
HPTPYQKPQP LLYSAMTISE SDKMANYMSN ASSQVTSLSN SREHSPDKTN SLPMVFGMHS  600
LSASKFLASP KLPMPQMPGF AWTDAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059568.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
TrEMBLA0A411EWL90.0A0A411EWL9_CAMSI; AINTEGUMEN-LIKE protein
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-132AP2 family protein