PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0305s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 578aa    MW: 63128.1 Da    PI: 7.2598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0305s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.76.6e-952125773374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                          + L+e+A a+++g +e a ++++r+ + ++p+g+p qRla y+  AL+++l++ ++++l+      +    +sse+  +++l+++ s ++
  Kalax.0305s0039.1.p 212 QSLIEAAAAIADGRQESAAEIVTRVAQSSNPRGTPEQRLAYYMSSALKSKLTSvEGQNLS-----DQI---RSSEHYESVQLLYQHSSCF 293
                          78**************************************************92222222.....222...38899999*********** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          k+++l+aN aI ea++  + +H++Dfd++ G+Q+ +Llq L+ R++g+p s+RiT+v+    +  e+ +  +e+L+++ +++gvpfe ++
  Kalax.0305s0039.1.p 294 KLGFLAANLAIIEATADVKSLHVVDFDMGDGAQYHNLLQLLSLRKSGKPtSVRITAVDV---SGLERWRIAKEKLNQISDRVGVPFELKT 380
                          *********************************************77776********9...579999********************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                          l   ++ d++ e+L  +p+E++aVnl+++l +l+desvs+e++rde+L+ vk+l+++vv+vve+++++n++++l+r++e++++y al++s
  Kalax.0305s0039.1.p 381 L-RLKVGDVSRESLCSSPDEVVAVNLAYSLSKLPDESVSTENQRDELLRRVKGLQARVVTVVEEDMNCNTAPLLTRVAECCSFYGALLES 469
                          5.889************************************************************************************* PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve......ee 354
                          ++++++re+ eri vE+  lgr+  n va eg +r++r+e ++kWr+r+++aGF++ p+s++++++ +  ++  +  g rv       e+
  Kalax.0305s0039.1.p 470 MDSGMGREEAERIRVEEG-LGRRMGNSVALEGGDRVQRCEVFGKWRARMGMAGFEAKPVSQNVVDSLSWRINSNS-GGTRVGcplfvkED 557
                          ******************.**************************************************999998.45554444444499 PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +g +++gW++r L+++SaWr
  Kalax.0305s0039.1.p 558 NGGVCFGWMGRILTVTSAWR 577
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.723184552IPR005202Transcription factor GRAS
PfamPF035142.3E-92212577IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSSGLPGGLP SSLSAAASSS SAGRPISNNG LIQQQQPVMY RLPQLLPENG SQGKRTLAEF  60
LNQPFQHHQG TAAEFSMRPV KPRIYHNPSP ISPQSPIDLL PEIGGRCPSR YQNFGTNNLS  120
HHHNRVAVAE TDKKMMNRLH ELEKQLLGDD NDDSVSVITG NEWSDTIQNL IATNEKTSPP  180
LQQQQQVYTS SPTSSSSSCS SYTVASPICP KQSLIEAAAA IADGRQESAA EIVTRVAQSS  240
NPRGTPEQRL AYYMSSALKS KLTSVEGQNL SDQIRSSEHY ESVQLLYQHS SCFKLGFLAA  300
NLAIIEATAD VKSLHVVDFD MGDGAQYHNL LQLLSLRKSG KPTSVRITAV DVSGLERWRI  360
AKEKLNQISD RVGVPFELKT LRLKVGDVSR ESLCSSPDEV VAVNLAYSLS KLPDESVSTE  420
NQRDELLRRV KGLQARVVTV VEEDMNCNTA PLLTRVAECC SFYGALLESM DSGMGREEAE  480
RIRVEEGLGR RMGNSVALEG GDRVQRCEVF GKWRARMGMA GFEAKPVSQN VVDSLSWRIN  540
SNSGGTRVGC PLFVKEDNGG VCFGWMGRIL TVTSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-442125776375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513664.11e-171scarecrow-like protein 8
SwissprotQ9FYR71e-132SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1R3IN331e-169A0A1R3IN33_COCAP; Transcription factor GRAS
TrEMBLB9RIU51e-169B9RIU5_RICCO; DELLA protein GAI, putative
STRINGXP_002513664.11e-170(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-131SCARECROW-like 8