PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0305s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 283aa    MW: 31797.9 Da    PI: 6.7977
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0305s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072312642154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Kalax.0305s0018.1.p 231 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 264
                          469*****************************87 PP
2ELK25.62.9e-09185206122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  Kalax.0305s0018.1.p 185 ELKIELKQGFKSRIEDVREEIL 206
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.9E-151963IPR005540KNOX1
PfamPF037901.9E-142162IPR005540KNOX1
SMARTSM012568.7E-1776131IPR005541KNOX2
PfamPF037911.5E-1281130IPR005541KNOX2
PROSITE profilePS512139.132185205IPR005539ELK domain
PROSITE profilePS5007111.726205268IPR001356Homeobox domain
SMARTSM003899.2E-11207272IPR001356Homeobox domain
SuperFamilySSF466893.42E-16207270IPR009057Homeodomain-like
CDDcd000867.57E-13208267No hitNo description
Gene3DG3DSA:1.10.10.603.9E-25212268IPR009057Homeodomain-like
PfamPF059209.3E-18225264IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MIGSSGLAGE ASSSFLSVDR LKAEIASHPL YQQLLSAHVD CLHVATPTHH RPMIDAQLAN  60
SHNLGLLTSC ASAAHHSLSS HDRHDLDTFM GEYLVLLCSL KDQLETHVKV DALEAVMACR  120
AIENAFQALT GVTLGAASGA TMSDEEDEDE DLELHHHHHS SNDMIMGFGL PTESERTLME  180
RVRQELKIEL KQGFKSRIED VREEILRKRR AGKLPSDTTS VLKNWWQQHS KWPYPTEDDK  240
AKLVEETGLQ LKQINNWFIN QRKRNWHVAS QSVTSLKSKR KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-13208264864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261281RKRNWHVASQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022738794.11e-141homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-125KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A2P5CSP51e-138A0A2P5CSP5_TREOI; Knotted-like homeobox transcription factor
STRINGEOY245901e-137(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-116KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]