PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0302s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 264aa MW: 29761.5 Da PI: 8.8476 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.9 | 1.8e-31 | 30 | 86 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eClkNhAas+G+++vDGCgEfmp g+egt +alkCaAC CHRnFHRre e Kalax.0302s0022.1.p 30 SGVRYRECLKNHAASMGTNVVDGCGEFMPG-GKEGTLEALKCAACHCHRNFHRRELEG 86 579**************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-20 | 32 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.0E-29 | 32 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.8E-29 | 33 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.802 | 34 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 153 | 222 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.52E-19 | 154 | 222 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-27 | 161 | 217 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MYGGGGGELE SPESLVGTRS KAVKSGSPSS GVRYRECLKN HAASMGTNVV DGCGEFMPGG 60 KEGTLEALKC AACHCHRNFH RRELEGHDSG SGNFARSVIV HPLHLPPPTQ ISFRHPHHHR 120 HRIVQPVAVA YGGGATESSS EDLVQVFDEM PQREIEPGSG RKRFRTKFTQ EQKDKMLGFA 180 ERLGWRLQRQ DDEMVAKFCN EVGIRRHVLK VWMHNNKSSF KKPPVDEDQH QQQPTHPQIQ 240 LHPQHHHLLH LHHQHQQKQQ ETL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-25 | 162 | 219 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022951673.1 | 2e-73 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | O64722 | 2e-61 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A2P6PYR5 | 4e-69 | A0A2P6PYR5_ROSCH; Putative transcription factor ZF-HD family | ||||
TrEMBL | W9S6C3 | 9e-69 | W9S6C3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010102085.1 | 1e-69 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 4e-64 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0302s0022.1.p |
Publications ? help Back to Top | |||
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