PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0301s0019.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 847aa MW: 92286.6 Da PI: 5.2234

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0301s0019.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.8	2.3e-41	145	221	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv ++qrfCqqCsrfh+l efDe+krsCrrrLa+hn+rrrk++ Kalax.0301s0019.2.p 145 VCQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGTVMQRFCQQCSRFHALPEFDEGKRSCRRRLAGHNKRRRKAN 221 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.1E-33	138	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.026	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-37	144	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-29	146	219	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MEANVGDQIR HFYGLGSSSL NPVGKRSLEW DLNDWKWDGH LFVASPLNCK PSGYSSHQLL 60 PETGGSSNNS STCSDDATIG NDTREQELLR SRRAAGGEVG DAGNLSLMLG GNGVPASEMQ 120 LTSWEGANGK KSKVVVGGSS SNRAVCQVED CGADLSKAKD YHRRHKVCEM HSKASRALVG 180 TVMQRFCQQC SRFHALPEFD EGKRSCRRRL AGHNKRRRKA NPLNVAPGTS LNDDQSNNYL 240 LLTLLKILAD LHSNRSDGAK NQDMLSHLLR SLEENTVANG GKNITEAVCA MLSNGRQALA 300 SSGGQHTLAM QEMPQNGSPS ADVSPPPSTV ISIKDSPPGY SVAPSTAAGP VKLNTFDLND 360 VYVDSADGID DLEGFRVPAN NGNSSIGCSS WMQQDVHSSS PPQVSRNSDS GSAQSPSSSS 420 GGNQIRTDRI VFKLFGKEPC DFPLALRTQI LDWLAHTPTD IESYIRPGCI VLSIYLRLAE 480 SVWDELCLDL SSSLSRLIDV SEDSFWSTGW VYVRVQDQVA FICNGQVVLD TTLPYISSAS 540 RILSVRPIAV PMSEKASFSI KGCNIFPPNS RLLCALEGQY LAQENIPESL EESSSNHNDS 600 DKLQVINYSC SIPAIIGRGF VEVEEDNGLG RDFFPFIVAE SDICSEIRML ESTLEPTETD 660 ETSENGEPDA RSNAIDFIQE MGWLLRRSQL RLRFGYSNKR AEDLFHLDRL KWLMEFSLDR 720 DWCAVVKKLL DILCDGVVGS GEHDSLVAAV SDMGILHRAV RRNSRPLVEL LLRYVPEQTS 780 NNSMMKGGEL LFMPNEMGPA GLTPLHIAAG RDGAEAVLDA LTDDPNKVTC LSTHCVGTSF 840 RLSMPS*

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MEANVGDQIR HFYGLGSSSL NPVGKRSLEW DLNDWKWDGH LFVASPLNCK PSGYSSHQLL  60
PETGGSSNNS STCSDDATIG NDTREQELLR SRRAAGGEVG DAGNLSLMLG GNGVPASEMQ  120
LTSWEGANGK KSKVVVGGSS SNRAVCQVED CGADLSKAKD YHRRHKVCEM HSKASRALVG  180
TVMQRFCQQC SRFHALPEFD EGKRSCRRRL AGHNKRRRKA NPLNVAPGTS LNDDQSNNYL  240
LLTLLKILAD LHSNRSDGAK NQDMLSHLLR SLEENTVANG GKNITEAVCA MLSNGRQALA  300
SSGGQHTLAM QEMPQNGSPS ADVSPPPSTV ISIKDSPPGY SVAPSTAAGP VKLNTFDLND  360
VYVDSADGID DLEGFRVPAN NGNSSIGCSS WMQQDVHSSS PPQVSRNSDS GSAQSPSSSS  420
GGNQIRTDRI VFKLFGKEPC DFPLALRTQI LDWLAHTPTD IESYIRPGCI VLSIYLRLAE  480
SVWDELCLDL SSSLSRLIDV SEDSFWSTGW VYVRVQDQVA FICNGQVVLD TTLPYISSAS  540
RILSVRPIAV PMSEKASFSI KGCNIFPPNS RLLCALEGQY LAQENIPESL EESSSNHNDS  600
DKLQVINYSC SIPAIIGRGF VEVEEDNGLG RDFFPFIVAE SDICSEIRML ESTLEPTETD  660
ETSENGEPDA RSNAIDFIQE MGWLLRRSQL RLRFGYSNKR AEDLFHLDRL KWLMEFSLDR  720
DWCAVVKKLL DILCDGVVGS GEHDSLVAAV SDMGILHRAV RRNSRPLVEL LLRYVPEQTS  780
NNSMMKGGEL LFMPNEMGPA GLTPLHIAAG RDGAEAVLDA LTDDPNKVTC LSTHCVGTSF  840
RLSMPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	138	219	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00060	PBM	Transfer from AT3G60030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021664715.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_021664716.1	0.0	squamosa promoter-binding-like protein 1 isoform X2
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A438IXL5	0.0	A0A438IXL5_VITVI; Squamosa promoter-binding-like protein 12
STRING	VIT_07s0005g02260.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Kalax.0301s0019.2.p

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]