PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0300s0033.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 1105aa MW: 123415 Da PI: 5.5993

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0300s0033.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179	6e-56	57	173	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 l+ ++rwl++ ei++iL+n++++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e n Kalax.0300s0033.1.p 57 LEAQHRWLRPAEICEILQNYKSFRICPEPADKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEAN 146 5679************************************************************************************ PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ++fqrr+yw+Lee+l++ivlvhy++vk Kalax.0300s0033.1.p 147 ESFQRRSYWMLEESLSHIVLVHYRDVK 173 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.195	52	178	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.2E-78	55	173	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.5E-49	58	172	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	1.5E-4	520	598	IPR002909	IPT domain
SuperFamily	SSF81296	8.4E-17	520	606	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.03E-12	704	812	No hit	No description
Gene3D	G3DSA:1.25.40.20	6.1E-16	710	815	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-16	711	815	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.99	711	824	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.1E-6	725	815	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.22	753	782	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.324	753	785	IPR002110	Ankyrin repeat
SMART	SM00248	800	792	821	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.72E-7	877	974	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	17	923	945	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.73	926	953	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0019	926	944	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.012	946	968	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.176	947	971	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.9E-4	949	968	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1105 aa Download sequence Send to blast
MNHPIVSAFE STPEVRKADR LCWAGTFEIG AQTTQWMDSN SRRHVLGNQL DIEQILLEAQ 60 HRWLRPAEIC EILQNYKSFR ICPEPADKPP SGSLFLFDRK VLRYFRKDGH NWRKKKDGKT 120 VKEAHERLKA GSVDVLHCYY AHGEANESFQ RRSYWMLEES LSHIVLVHYR DVKGNRTSIS 180 RTRENVERSH AAWEAGDNLS ESEISNSASS SMQRSSYQNH SPTIDTSLSS MHASQYEDAE 240 SAYNDLNSSG HHSLFEVHTH VNGNLAGSSN TYYTVSNYQD KRSDYGGVDI TSLTRVGTSE 300 DGAGLGYERQ KHNDFPSWEH VLKNCAGEIP SMGFESSLLS ARPDNTGNIF KQESHKLGQL 360 MTDGFTNKQE IASDVQYQGE WLTSDGFSSD LSKWPLDMEY NSNTDGQETG SLNLLGSMES 420 SHSYPNEPDE PPKLEPQGMK HPLLQGPVNE DGLRKLDSFN RWMSKELGDV DDSIVQSSSG 480 AYWSAVESEN VIDDSGSASQ GHLDADMVGP SLSMDQLFSI IDFSPNWAYE DSEIKVLITG 540 KFLKGQSEVE KLKWSCMFGE IEVPAEVIAD GVLRCLAPYH KYGRVPFYVT CSNRFACSEV 600 REFEFRAHPV QGSVDADASK DQEIIFHMRL LKLLSLGLDP PDYDSKVPGD NSSLSAKISD 660 LMNEDEDEWD QMLKTPSAEN FPSERMKDQL IQKLLKEKLH VWLLHKASEG GKGANVLDEG 720 GQGVLHLAAA LGYGWAIPPT ILAGVNINFR DVNGWTALHW AAFCGRERTV ASLISLGAAA 780 GALTDPTPKY PSGRTAADLA SMNRHKGIAG YLAENALAAH LISLDLKDPV ASDAVDVSGV 840 KAVQAVAERD ANPITDSHIP YISLKDSLTA VCNATQAAAR ITQVFRAQSF QRKQVQEYED 900 NERSSEAALS HIALKQQNAF HGGPVDAATR IQKNYRSYKG RKEYLIIRQR IVKLQAHVRG 960 HQVRKNYRKF IWSVGILEKV ILRWRRKGSG LRGFKPEGQI EGATSNTSLS KEDDYDFFKE 1020 GRKQTEERLQ KALARVKSMV QYPESRAQYQ RLLNVVSEIE ETKGAYDRAL NAGADEMADF 1080 DDDLIDLEAL LDADEMDSLM MAES*

Sequence ? help Back to Top

Protein Sequence Length: 1105 aa Download sequence Send to blast

MNHPIVSAFE STPEVRKADR LCWAGTFEIG AQTTQWMDSN SRRHVLGNQL DIEQILLEAQ  60
HRWLRPAEIC EILQNYKSFR ICPEPADKPP SGSLFLFDRK VLRYFRKDGH NWRKKKDGKT  120
VKEAHERLKA GSVDVLHCYY AHGEANESFQ RRSYWMLEES LSHIVLVHYR DVKGNRTSIS  180
RTRENVERSH AAWEAGDNLS ESEISNSASS SMQRSSYQNH SPTIDTSLSS MHASQYEDAE  240
SAYNDLNSSG HHSLFEVHTH VNGNLAGSSN TYYTVSNYQD KRSDYGGVDI TSLTRVGTSE  300
DGAGLGYERQ KHNDFPSWEH VLKNCAGEIP SMGFESSLLS ARPDNTGNIF KQESHKLGQL  360
MTDGFTNKQE IASDVQYQGE WLTSDGFSSD LSKWPLDMEY NSNTDGQETG SLNLLGSMES  420
SHSYPNEPDE PPKLEPQGMK HPLLQGPVNE DGLRKLDSFN RWMSKELGDV DDSIVQSSSG  480
AYWSAVESEN VIDDSGSASQ GHLDADMVGP SLSMDQLFSI IDFSPNWAYE DSEIKVLITG  540
KFLKGQSEVE KLKWSCMFGE IEVPAEVIAD GVLRCLAPYH KYGRVPFYVT CSNRFACSEV  600
REFEFRAHPV QGSVDADASK DQEIIFHMRL LKLLSLGLDP PDYDSKVPGD NSSLSAKISD  660
LMNEDEDEWD QMLKTPSAEN FPSERMKDQL IQKLLKEKLH VWLLHKASEG GKGANVLDEG  720
GQGVLHLAAA LGYGWAIPPT ILAGVNINFR DVNGWTALHW AAFCGRERTV ASLISLGAAA  780
GALTDPTPKY PSGRTAADLA SMNRHKGIAG YLAENALAAH LISLDLKDPV ASDAVDVSGV  840
KAVQAVAERD ANPITDSHIP YISLKDSLTA VCNATQAAAR ITQVFRAQSF QRKQVQEYED  900
NERSSEAALS HIALKQQNAF HGGPVDAATR IQKNYRSYKG RKEYLIIRQR IVKLQAHVRG  960
HQVRKNYRKF IWSVGILEKV ILRWRRKGSG LRGFKPEGQI EGATSNTSLS KEDDYDFFKE  1020
GRKQTEERLQ KALARVKSMV QYPESRAQYQ RLLNVVSEIE ETKGAYDRAL NAGADEMADF  1080
DDDLIDLEAL LDADEMDSLM MAES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cxk_A	2e-13	520	612	9	95	calmodulin binding transcription activator 1
2cxk_B	2e-13	520	612	9	95	calmodulin binding transcription activator 1
2cxk_C	2e-13	520	612	9	95	calmodulin binding transcription activator 1
2cxk_D	2e-13	520	612	9	95	calmodulin binding transcription activator 1
2cxk_E	2e-13	520	612	9	95	calmodulin binding transcription activator 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645223.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X3
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2R6RDE6	0.0	A0A2R6RDE6_ACTCH; Calmodulin-binding transcription activator 3 like
STRING	VIT_07s0141g00250.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Kalax.0300s0033.1.p

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]