PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0299s0019.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29029.7 Da PI: 7.4546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+ll+++++++G g W+ + + g++R++k+c++rw++yl Kalax.0299s0019.1.p 8 RGAWTPEEDKLLKECIEKYGVGKWNEVVTRSGLNRCRKSCRLRWLDYL 55 89*******************************************997 PP | |||||||
2 | Myb_DNA-binding | 40.9 | 4.7e-13 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l+ +++k+lG++ W++Ia +++ gRt++ +k++w++++ Kalax.0299s0019.1.p 61 RGGFGEDEVDLICKLHKLLGNR-WSLIAGRLP-GRTANGVKNYWNSHM 106 677899****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.15 | 1 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-27 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-16 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.12E-11 | 10 | 55 | No hit | No description |
SMART | SM00717 | 4.9E-11 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.318 | 60 | 110 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-11 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.34E-7 | 66 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSGLGVRRGA WTPEEDKLLK ECIEKYGVGK WNEVVTRSGL NRCRKSCRLR WLDYLQPNIK 60 RGGFGEDEVD LICKLHKLLG NRWSLIAGRL PGRTANGVKN YWNSHMRKKQ HQEVMCHKAS 120 SHHQTTTPNK EGCVIVKPQP WRFSKTSLAS LQKKLSVQFQ HNFHCDRVKN DTKHTCSPSS 180 FELQEDALSI SSWWEDLLQK DDGFFVDQNA DDGSVGICWS DVDAGTTTAE CNEADGVVNL 240 DDQELYFNIQ LWDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 8 | 109 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FNV9 | 1e-55 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A3S6QBC9 | 6e-62 | A0A3S6QBC9_PETIN; Anthocyanin synthesis regulator 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 5e-58 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0299s0019.1.p |
Publications ? help Back to Top | |||
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