PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0298s0055.5.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 529aa    MW: 58257.5 Da    PI: 8.2974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0298s0055.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000267090323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Kalax.0298s0055.5.p 70 CEVCNKGFQRDQNLQLHRRGH 90
                         *******************88 PP
2zf-C2H210.70.0017145167123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kalax.0298s0055.5.p 145 WKCDKCSKNYAVKSDWKAHSKIC 167
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-76790No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8456890IPR007087Zinc finger, C2H2
SMARTSM003550.136890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355110110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-7140165No hitNo description
SMARTSM00355220145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MMSQGLSPVP SSILGFVGDR SKNPDSSNSP ATQPSASSST LKRKRSLPDP DSEVIALSPT  60
SLMATNRFLC EVCNKGFQRD QNLQLHRRGH NLPWKLKQRS NKEVVKKKVY ICPEKSCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKNYAVKSDW KAHSKICGTR EYKCDCGTLF  180
SRKDSFITHR AFCAAVIDQS SSRFAPSVSA TINPLSLRND FLSGNSVQTH QLSDGGFYPE  240
LSSSFHSYGH VNSNNVDGSK SIRHPQWLDH HHHPLNASAH FLMGNPAANL SHELLLQNAG  300
QGNLFGSSSS SSQAPWLMNK SPDQSAFVND SMSSLDQILG NASGGGVMRV KREDEILGND  360
NIVDNMPSLY NPTTINQQQQ QQGVTSNQSA DQFLSSFFGR HNSNSLGFMS SGLSNEQLFT  420
DNNNGFADNS SFSRPPPAIK DSHDTANLNH LMLMHESAAA VFKQEITRPN TKHQEESSQT  480
RDFLGVGGNE MISREEQFQL AASASEQFGS SSSAAELDVS HYNQEWKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29141201363Zinc finger protein JACKDAW
5b3h_F2e-29141201363Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021683823.11e-121protein indeterminate-domain 9-like
TrEMBLA0A1J0HTI51e-122A0A1J0HTI5_9ROSI; C2H2-type zinc finger protein
STRINGXP_009789501.11e-116(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-103C2H2-like zinc finger protein