PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0296s0025.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 317aa MW: 33956.8 Da PI: 9.0377

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0296s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.1e-39	45	105	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+ l+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s Kalax.0296s0025.1.p 45 KEQPLPCPRCNSTNTKFCYYNNYSLSQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSP 105 57899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	42	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	47	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.441	49	103	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	51	87	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MNAAQWQQEI VLKPVGDICS SSKANNTKGV GGEKKAAGTV VRPPKEQPLP CPRCNSTNTK 60 FCYYNNYSLS QPRYFCKGCR RYWTEGGSLR NIPVGGGSRK NKRSPSSSSA PPGVASKKLF 120 VHPPSLQNPN IMIHQPERAG HDLNLSFPHH HQDYRSISDF VHLPNTSSQT TAPTAATSHL 180 SALELLTGMT SRGVGVGGFS NCFMPISDPD SVYPSASFSN FMHDFKPPAL NFSLDNRLGI 240 GPSGGGAFRS MTTHNDEIST SGGGGIRVLA SPFDDLKSHQ ADDHQHQQQA DQNRGHGVVS 300 TGYWTGMIGG GGGSDW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439815.1	5e-77	PREDICTED: dof zinc finger protein DOF4.6 isoform X1
TrEMBL	A0A0D2U9N9	1e-75	A0A0D2U9N9_GOSRA; Uncharacterized protein
STRING	EOY23946	1e-73	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Kalax.0296s0025.1.p