PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0293s0040.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 550aa    MW: 61957.4 Da    PI: 9.1556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0293s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.35.8e-1171765471374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+av+++d + a++lL++++++asp gd +qRla++f+ +L+arla+++s++yk l++++ts    ++ l+a++l+  ++P+
  Kalax.0293s0040.1.p 176 LRTLLVHCAQAVAADDSRSANELLKQIRQHASPFGDGNQRLAHCFADGLEARLAGTGSQIYKGLTSKKTS---AADILKAYHLYLAACPF 262
                          6789*************************************************************99999...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s++  N++I++ ++++ rvHiiDf+i +G+QWp++lq ++ R++gpp++RiTgv+ p++g   +e++eetg+r+a +Ae++g+pfef
  Kalax.0293s0040.1.p 263 RKISNFFSNKTIMNVAANSMRVHIIDFGILYGFQWPTFLQRISLRAGGPPKVRITGVDFPQPGfrPAERVEETGRRIAGYAERFGIPFEF 352
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+ +ak++e++++e+L+++++E l+Vn+ ++ ++l+de+ + +s+r+ vL+lv+++ P+v+++   +  +n++ F++rf eal ++salf
  Kalax.0293s0040.1.p 353 NA-IAKKWETIKIEDLKIDQDELLIVNSLYRFQNLHDETIAANSARSIVLNLVRKITPEVFILGIVNGAYNAPFFVTRFREALFHFSALF 441
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+le+++pre  er+ +Ere++gre+ nv+aceg er+er et+++W+ r  +aGF+++p++ ++ k a+  ++  + + + v+e+ +++
  Kalax.0293s0040.1.p 442 DMLETNVPREYLERMLIEREIFGREALNVIACEGWERIERPETYKQWQVRQFRAGFRQLPVDRDIIKRAEDRVKSSYHKDFVVDEDGQWF 531
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r+++++S+W+
  Kalax.0293s0040.1.p 532 LQGWKGRTIYALSSWK 547
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.725150527IPR005202Transcription factor GRAS
PfamPF035142.0E-114176547IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MLNGMVDSPI STLQISDFCK ESASVWQFKK GVEEANKFLP ASANLLVNLE GRASTYLESE  60
SETNGALVKE ETKNDGEYVS YGSRGRKHLH READESEERS SKQAAVYVES NVKSEIFDEV  120
LLCSKGSTTS PLATLRESLQ NGTSKASQQN GLVKAAVSTG KGRGRKQNGK KEVVDLRTLL  180
VHCAQAVAAD DSRSANELLK QIRQHASPFG DGNQRLAHCF ADGLEARLAG TGSQIYKGLT  240
SKKTSAADIL KAYHLYLAAC PFRKISNFFS NKTIMNVAAN SMRVHIIDFG ILYGFQWPTF  300
LQRISLRAGG PPKVRITGVD FPQPGFRPAE RVEETGRRIA GYAERFGIPF EFNAIAKKWE  360
TIKIEDLKID QDELLIVNSL YRFQNLHDET IAANSARSIV LNLVRKITPE VFILGIVNGA  420
YNAPFFVTRF REALFHFSAL FDMLETNVPR EYLERMLIER EIFGREALNV IACEGWERIE  480
RPETYKQWQV RQFRAGFRQL PVDRDIIKRA EDRVKSSYHK DFVVDEDGQW FLQGWKGRTI  540
YALSSWKPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-501655488380Protein SCARECROW
5b3h_A8e-511655487379Protein SCARECROW
5b3h_D8e-511655487379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240788.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_008240793.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A067EBD10.0A0A067EBD1_CITSI; Uncharacterized protein
TrEMBLA0A251NVX50.0A0A251NVX5_PRUPE; Uncharacterized protein
STRINGXP_008240788.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein