PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0293s0011.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 289aa MW: 32127.4 Da PI: 9.3737 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 79 | 123 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++ + Wk+I +g ++t q++s+ qky Kalax.0293s0011.2.p 79 RENWTDEEHDKFLEALQLFDRD-WKKIEDFVG-TKTVIQIRSHAQKY 123 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-18 | 73 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.23 | 74 | 128 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.4E-18 | 77 | 126 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.4E-7 | 77 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-12 | 79 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-9 | 81 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MNGRRCSSIS LHKFDSVAKS NFSHQFLSLA ATCFTPIPKR NSRAFFLVRP FVWTEMASST 60 PTDALEKKVR KPYTITKSRE NWTDEEHDKF LEALQLFDRD WKKIEDFVGT KTVIQIRSHA 120 QKYFLKVQKN GTLAHVPPPR PKRKSAHPYP QKASKNADVG PKGVTTMIGS STAGGSDSSR 180 SFLSSEGPNQ DKQAPVVHGI PDFAEVYNFI GSVFDPETKG HVQKLKEMDP INFETVLLLM 240 RNLTVNLSNP DFEPIKTVLA SSCDIDATSA DPTVGSVRDQ ETDIVSHS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028775219.1 | 1e-112 | protein REVEILLE 8 | ||||
Swissprot | Q8RWU3 | 1e-106 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | V5T8I9 | 1e-111 | V5T8I9_ARAHY; Putative MYB-related protein 19 | ||||
STRING | PGSC0003DMT400028711 | 1e-109 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-102 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0293s0011.2.p |
Publications ? help Back to Top | |||
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