PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0290s0033.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 382aa MW: 42466.7 Da PI: 5.2636 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.9 | 1.4e-13 | 201 | 234 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C+tt+ p+WR+ p+g + +C CGl+ rk+g+ Kalax.0290s0033.2.p 201 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 234 ********************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.9E-10 | 195 | 244 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 15.512 | 195 | 248 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.1E-13 | 196 | 245 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 3.99E-11 | 197 | 251 | No hit | No description |
CDD | cd00202 | 1.03E-9 | 200 | 243 | No hit | No description |
Pfam | PF00320 | 3.6E-10 | 201 | 233 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 14.379 | 300 | 381 | IPR027353 | NET domain |
Pfam | PF17035 | 4.5E-15 | 310 | 371 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MSVSPSSDGP KKEVPDYIGF FTHELEDLMS GADVSGDDFF PLLGFKSDTA GREMRGDDAN 60 ESREGGGGLK KSGSLFCDGL GGELSDYKKE KLKGLLKQSV SIFTQEVDQM VEVVLATCQL 120 QHRLRSKGTA SSSQGSASGN NERARSSEKM KRGKFTSPKT SDAPAPVRPP ANIESVEEGY 180 LERPRKFRSM IDILSQNGQS CAHCNTTQAP MWRKTPSGAR ICDFCGLRLR KRGMQLSPQK 240 KDQTITGSLQ EADNKDEEVT DDLKFLLGND RLQVEQTMKK YADEISASLG LLEQQLEGFL 300 DNVTSKCRSM TFFEKQSLWS LIKDLPPENF DRVVEIIKRS RGLDQRDEND ILVDLEDTDN 360 AVLWRLYYYA KAVENARNLV G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45170.1 | 2e-07 | GATA transcription factor 14 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0290s0033.2.p |