PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0290s0033.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 404aa    MW: 44800.2 Da    PI: 5.4383
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0290s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.81.5e-13223256135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C+tt+ p+WR+ p+g + +C  CGl+ rk+g+
  Kalax.0290s0033.1.p 223 CAHCNTTQAPMWRKTPSGAR-ICDFCGLRLRKRGM 256
                          ********************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011415.512217270IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-10217266IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-13218267IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.32E-11219273No hitNo description
CDDcd002021.16E-9222265No hitNo description
PfamPF003203.9E-10223255IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.379322403IPR027353NET domain
PfamPF170354.9E-15332393IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSVSPSSDGP KKEVPDYIGF FTHELEDLMS GADVSGDDFF PLLGFKSDTA GREMRGDDAN  60
ESREGGGGLK KSGSLFCDGL GGELSDYKKE KLKGLLKQSV SIFTQEVDQM VEVVLATCQL  120
QHRLRSKGTA SSSQGSASGN NERARSSEKM KRGKFTSPKT SDAPAPVRPP ANIESVEEER  180
SRAVRTGGTT GWTTGELSTQ GYLERPRKFR SMIDILSQNG QSCAHCNTTQ APMWRKTPSG  240
ARICDFCGLR LRKRGMQLSP QKKDQTITGS LQEADNKDEE VTDDLKFLLG NDRLQVEQTM  300
KKYADEISAS LGLLEQQLEG FLDNVTSKCR SMTFFEKQSL WSLIKDLPPE NFDRVVEIIK  360
RSRGLDQRDE NDILVDLEDT DNAVLWRLYY YAKAVENARN LVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-07GATA transcription factor 15