PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0290s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 360aa MW: 39185.6 Da PI: 6.2561 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 167 | 217 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+ge Kalax.0290s0006.1.p 167 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFMLRGE 217 59******9.**********965...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.08E-34 | 166 | 226 | No hit | No description |
SMART | SM00380 | 3.3E-39 | 167 | 230 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 167 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-23 | 167 | 224 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.879 | 167 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 168 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-14 | 168 | 217 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 190 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MAALMDLYSS NRVGSDPFMG GELMEALEPF MRSAPPPPSS SPPSSSSSSN PIYSSSSSSS 60 FQPSFTHPQL YPNPNVFAPG FDSQLDQHSF FNSSSSSFPS SSQFQMFQSY QSQYDPLVNS 120 FPPPCTSVSA PVSNLARESQ QNYVMSFLSA KPVQMKLSAS PAKPTKLYRG VRQRHWGKWV 180 AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AFMLRGEFAR LNFPNLKHSG SVIRGEFGEF 240 KPLHSSVDAK LQAICDEMSE AQKQGKSTGR RKSSKAAALA VNAPPPPAAE DTTEGDGFVC 300 KAENLSNNSG SDGSAGSSPI SELTFPEFDE PAGWNWNPMS ENFMLQKHPS EIDWASILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 166 | 224 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 166 | 230 | 4 | 69 | ATERF1 |
3gcc_A | 2e-20 | 166 | 230 | 4 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229632 | 2e-38 | KP229632.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF09) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315885.1 | 1e-93 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 2e-78 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | D5L106 | 3e-92 | D5L106_MALDO; AP2 domain class transcription factor | ||||
STRING | XP_008362598.1 | 3e-92 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-59 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0290s0006.1.p |
Publications ? help Back to Top | |||
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