PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0287s0027.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SRS | ||||||||
Protein Properties | Length: 347aa MW: 35529.5 Da PI: 8.0707 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 201.8 | 2e-62 | 120 | 279 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa++rrerq ++++ +++a+ + +a s k+ ++++a+s+t+ s+ Kalax.0287s0027.2.p 120 SSSTCQDCGNQAKKDCSHRRCRTCCKSRGYDCSTHVKSTWVPASRRRERQLLASSTGASSASMSLSAGSGVKKARLVSSNAATSHTSNSN 209 5689*********************************************98888888888877777777777777777777777777555 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++et+s lP ++ ++a f+cv+v+s++dg++e+aYq+ v+igGhvfkG+LydqG e+ Kalax.0287s0027.2.p 210 -TPPRSFETTSchqdptfketLPGQILAPATFKCVKVTSINDGDDEFAYQAMVKIGGHVFKGFLYDQGEES 279 .56778888888899*****************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-59 | 121 | 278 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.0E-27 | 123 | 165 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.8E-26 | 230 | 276 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MWPPSSAARV LNYSIPHDMG MVGLRDLFVV APASSFHHSS LNEPNLMAEG LGGGNPATAL 60 GVGLGVIPLL TAAPCIADDG GVNGRSGRGG GGIQLWQNPG LNGGNNNNAS VMQTIGASSS 120 SSTCQDCGNQ AKKDCSHRRC RTCCKSRGYD CSTHVKSTWV PASRRRERQL LASSTGASSA 180 SMSLSAGSGV KKARLVSSNA ATSHTSNSNT PPRSFETTSC HQDPTFKETL PGQILAPATF 240 KCVKVTSIND GDDEFAYQAM VKIGGHVFKG FLYDQGEESG TREHQQPGMP NISDLHLGGG 300 NGGGGMHKVS CSTTGLEAPL ADVYGGGSTS GGGILGGSGY GNPIIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ847758 | 0.0 | GQ847758.1 Kalanchoe blossfeldiana cultivar Celine SHI-related protein SRS2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651514.2 | 1e-102 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 7e-79 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | E2D550 | 1e-117 | E2D550_KALBL; SHI-related protein SRS2 (Fragment) | ||||
STRING | EOY32912 | 1e-105 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 9e-68 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0287s0027.2.p |
Publications ? help Back to Top | |||
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