PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0287s0027.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 347aa MW: 35529.5 Da PI: 8.0707

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0287s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	201.8	2e-62	120	279	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +++CqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa++rrerq ++++ +++a+ + +a s k+ ++++a+s+t+ s+ Kalax.0287s0027.1.p 120 SSSTCQDCGNQAKKDCSHRRCRTCCKSRGYDCSTHVKSTWVPASRRRERQLLASSTGASSASMSLSAGSGVKKARLVSSNAATSHTSNSN 209 5689*******************************************98888888888877777777777777777777777777555 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++et+s lP ++ ++a f+cv+v+s++dg++e+aYq+ v+igGhvfkG+LydqG e+ Kalax.0287s0027.1.p 210 -TPPRSFETTSchqdptfketLPGQILAPATFKCVKVTSINDGDDEFAYQAMVKIGGHVFKGFLYDQGEES 279 .56778888888899***************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-59	121	278	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.0E-27	123	165	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.8E-26	230	276	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MWPPSSAARV LNYSIPHDMG MVGLRDLFVV APASSFHHSS LNEPNLMAEG LGGGNPATAL 60 GVGLGVIPLL TAAPCIADDG GVNGRSGRGG GGIQLWQNPG LNGGNNNNAS VMQTIGASSS 120 SSTCQDCGNQ AKKDCSHRRC RTCCKSRGYD CSTHVKSTWV PASRRRERQL LASSTGASSA 180 SMSLSAGSGV KKARLVSSNA ATSHTSNSNT PPRSFETTSC HQDPTFKETL PGQILAPATF 240 KCVKVTSIND GDDEFAYQAM VKIGGHVFKG FLYDQGEESG TREHQQPGMP NISDLHLGGG 300 NGGGGMHKVS CSTTGLEAPL ADVYGGGSTS GGGILGGSGY GNPIIN*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MWPPSSAARV LNYSIPHDMG MVGLRDLFVV APASSFHHSS LNEPNLMAEG LGGGNPATAL  60
GVGLGVIPLL TAAPCIADDG GVNGRSGRGG GGIQLWQNPG LNGGNNNNAS VMQTIGASSS  120
SSTCQDCGNQ AKKDCSHRRC RTCCKSRGYD CSTHVKSTWV PASRRRERQL LASSTGASSA  180
SMSLSAGSGV KKARLVSSNA ATSHTSNSNT PPRSFETTSC HQDPTFKETL PGQILAPATF  240
KCVKVTSIND GDDEFAYQAM VKIGGHVFKG FLYDQGEESG TREHQQPGMP NISDLHLGGG  300
NGGGGMHKVS CSTTGLEAPL ADVYGGGSTS GGGILGGSGY GNPIIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ847758	0.0	GQ847758.1 Kalanchoe blossfeldiana cultivar Celine SHI-related protein SRS2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651514.2	1e-102	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	7e-79	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	E2D550	1e-117	E2D550_KALBL; SHI-related protein SRS2 (Fragment)
STRING	EOY32912	1e-105	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	9e-68	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Kalax.0287s0027.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]