PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0286s0039.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 531aa MW: 59853.9 Da PI: 7.1532

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0286s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.5	3.3e-27	130	215	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e++ L+++r++++++++++ k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+ke ++++ + +++++f+qlea Kalax.0286s0039.1.p 130 RWPREETMSLLQIRSRLHSNFKQATHKGPLWDEVSRIMyEEHGYQRSGKKCREKFENLYKYYKKTKEAKSGK--HDGKNYRFFRQLEA 215 8***********************************99************************9995..67778*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.004	123	188	IPR017877	Myb-like domain
CDD	cd12203	1.10E-22	129	195	No hit	No description
Pfam	PF13837	2.1E-19	129	216	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MEQVDEQQQQ AAAEVDVVNH HQNNSINNHY AGLIQTSKPL TTSMSYFQPP QPTNLDHPIY 60 SALPHRFFFN SNTHNNQNQQ QQRPYHEVDG IGTTSTYLAA GGLLLESCSA ASEATAAAFN 120 YGSSNSCSSR WPREETMSLL QIRSRLHSNF KQATHKGPLW DEVSRIMYEE HGYQRSGKKC 180 REKFENLYKY YKKTKEAKSG KHDGKNYRFF RQLEALYGDQ NEVIGTSMTD HLAAAQPNTI 240 SSQAHFPPNP AADSGGINNN QIMMMRSSGH LFGDSDPQVI SPNNHHHNSM KLPCDQSCLS 300 LSNHNSSLFT SSSSEDNKRG HNKKYKLKVK IKEFIDTQMN SLMEQQQLCM EKVMETIEKK 360 ETERALREEE WRQEAEERLE KEHKYWESER AWMKARDAAL MVTIQKLTAA RSAASSSSSV 420 RDVARVTSLA SHMQQIPFSS SSGNLINKQP AEIVTVRNPQ ALYSNQESQD GWFMAAANHH 480 HHHDSNNNNG FRFVMSDGNN GGSGGSVIWD GSSSFGLKLN NGDDDHHHQN *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MEQVDEQQQQ AAAEVDVVNH HQNNSINNHY AGLIQTSKPL TTSMSYFQPP QPTNLDHPIY  60
SALPHRFFFN SNTHNNQNQQ QQRPYHEVDG IGTTSTYLAA GGLLLESCSA ASEATAAAFN  120
YGSSNSCSSR WPREETMSLL QIRSRLHSNF KQATHKGPLW DEVSRIMYEE HGYQRSGKKC  180
REKFENLYKY YKKTKEAKSG KHDGKNYRFF RQLEALYGDQ NEVIGTSMTD HLAAAQPNTI  240
SSQAHFPPNP AADSGGINNN QIMMMRSSGH LFGDSDPQVI SPNNHHHNSM KLPCDQSCLS  300
LSNHNSSLFT SSSSEDNKRG HNKKYKLKVK IKEFIDTQMN SLMEQQQLCM EKVMETIEKK  360
ETERALREEE WRQEAEERLE KEHKYWESER AWMKARDAAL MVTIQKLTAA RSAASSSSSV  420
RDVARVTSLA SHMQQIPFSS SSGNLINKQP AEIVTVRNPQ ALYSNQESQD GWFMAAANHH  480
HHHDSNNNNG FRFVMSDGNN GGSGGSVIWD GSSSFGLKLN NGDDDHHHQN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LZS0	4e-74	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2G9G8M2	6e-83	A0A2G9G8M2_9LAMI; Transcription factor GT-2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-60	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0286s0039.1.p

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]