PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0285s0050.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 306aa    MW: 34955.2 Da    PI: 6.7983
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0285s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.31.9e-2668154188
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fYn+YA + GF +r++ + ks++++ei++  fvC+keg+++++k++ +k  +++ etrtgCkak+++  + +++w+v+k+e eHnH 
  Kalax.0285s0050.2.p  68 DFYNHYALTHGFGIRINGHAKSRTSKEIIRWLFVCNKEGRKSKDKRQISKIIKSQRETRTGCKAKMEIAIR-NDEWVVDKFEDEHNHM 154
                          6**********************************************9**********************9.9**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2368153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEIDEAQIAD NNSPHEVEFS TNDISHVQAN EESEMELGGD DDTFVSNIQQ DNALILGRVF  60
TSKDEAYDFY NHYALTHGFG IRINGHAKSR TSKEIIRWLF VCNKEGRKSK DKRQISKIIK  120
SQRETRTGCK AKMEIAIRND EWVVDKFEDE HNHMPTTPSK VMKHRSHNRF HRTPIVRNLV  180
NELNQKGLQP SVITKVVNAI GGSHEVDISS KQCSNLLRME KKHHVGRECY GIIKYFHEKT  240
KSDGSHYFAM DLAPDGSLRS VFWADGRSSQ PSSQSILFGA ALLEDETEET FIWFMPISDN  300
NELKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734634.13e-75protein FAR1-RELATED SEQUENCE 7-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-26FAR1-related sequence 5