PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0284s0036.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 410aa MW: 45055.5 Da PI: 5.7971

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0284s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.4	3.6e-09	209	263	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr++r NR +A rs +RK +i+eLe+k+++L++e ++L +l+ l+ l Kalax.0284s0036.1.p 209 KRAKRIWANRQSAARSKERKMRYIAELERKIQTLQTEATSLTAQLNLLQRDTNGL 263 9*********************************************998776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-15	205	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	207	270	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.3E-8	209	263	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-10	209	263	No hit	No description
SuperFamily	SSF57959	1.69E-10	209	260	No hit	No description
CDD	cd14703	2.71E-23	210	259	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MEMEKEAITS AAAESDSVLS HTLVSSGMTT TSLGAKEELG VRHFSQDISQ MPEYPPKKSA 60 HRRVHSEIIM LPDDLFFDND LGIVPGIDGP SFSDDTDEAL VSMCLAMDKI HASSATSCQV 120 GGSSQGVAGP DLAPLSAFAE STPQASGGGF AGLTDKPRIR HQHSQSMDGL TSIKQELLMS 180 ASEESSSASD SKKAMSAVKL AELALVDPKR AKRIWANRQS AARSKERKMR YIAELERKIQ 240 TLQTEATSLT AQLNLLQRDT NGLMAENNEL KVHLQRMEQQ VLMQDALNEA LKEEIQHMKL 300 LTGQTMLNGG PVMNYPYGAT QYYPNNQGMH TLMAAQQFQH IQIHAHKQQQ QFQQLQHHPP 360 RDQQQHQPLQ ELHWQPDAIV TGSIPSPPQK ESDTDIYPPT DNDSTLPSS*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MEMEKEAITS AAAESDSVLS HTLVSSGMTT TSLGAKEELG VRHFSQDISQ MPEYPPKKSA  60
HRRVHSEIIM LPDDLFFDND LGIVPGIDGP SFSDDTDEAL VSMCLAMDKI HASSATSCQV  120
GGSSQGVAGP DLAPLSAFAE STPQASGGGF AGLTDKPRIR HQHSQSMDGL TSIKQELLMS  180
ASEESSSASD SKKAMSAVKL AELALVDPKR AKRIWANRQS AARSKERKMR YIAELERKIQ  240
TLQTEATSLT AQLNLLQRDT NGLMAENNEL KVHLQRMEQQ VLMQDALNEA LKEEIQHMKL  300
LTGQTMLNGG PVMNYPYGAT QYYPNNQGMH TLMAAQQFQH IQIHAHKQQQ QFQQLQHHPP  360
RDQQQHQPLQ ELHWQPDAIV TGSIPSPPQK ESDTDIYPPT DNDSTLPSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119584.1	1e-141	probable transcription factor PosF21
Refseq	XP_027119585.1	1e-141	probable transcription factor PosF21
Refseq	XP_027119586.1	1e-141	probable transcription factor PosF21
Refseq	XP_027165295.1	1e-141	probable transcription factor PosF21
Refseq	XP_027165296.1	1e-141	probable transcription factor PosF21
Refseq	XP_027165298.1	1e-141	probable transcription factor PosF21
Swissprot	Q04088	1e-115	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A068VB62	1e-139	A0A068VB62_COFCA; Uncharacterized protein
STRING	VIT_05s0102g01120.t01	1e-138	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-115	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0284s0036.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]