PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0283s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 348aa    MW: 38869.1 Da    PI: 10.6999
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0283s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.85.2e-1773162186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +Wt++ +++Li+a   +  +l+rg+l++++W ev++++     ++++ +r+ +qCk++++ l+k+yk +k +++  +s + s +p+f++l
  Kalax.0283s0046.1.p  73 CWTEEATRTLIDAWGTRYLDLNRGNLRQKHWLEVADAVnarhgAAKKTRRTDVQCKNRIDTLKKKYKIEKSRASAAASYA-SPWPFFHRL 161
                          8**************************************99999999***************************986555.59******9 PP

             trihelix  86 e 86 
                          +
  Kalax.0283s0046.1.p 162 D 162
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2671164No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTSSAFPHVF PATPQNLNLS RKLSRRPKHD RRQQISSLKD TPMDDPPPPP QQHTLALVPH  60
RAPHGPVPFR EDCWTEEATR TLIDAWGTRY LDLNRGNLRQ KHWLEVADAV NARHGAAKKT  120
RRTDVQCKNR IDTLKKKYKI EKSRASAAAS YASPWPFFHR LDSLIGPIPS NKSSLSSLPA  180
HRRSGFSAPV PVAPRSASVK RPAFDDSSFR RNFFSTFAAA AAAATAEDSD ATRKSRSSSA  240
GRLGGAVGDT GGCKELAQAI ATFGEIYERV EGSKQRQVIE LEMKRMQFAK ELEIQRMEML  300
VDMQLQFEKS KRQKRQSNGA GNTLFLLSPF LIVYNLSHQS DLQQACY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277022.18e-91PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1U8B7L02e-89A0A1U8B7L0_NELNU; trihelix transcription factor ASIL2
STRINGXP_010277022.13e-90(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-44sequence-specific DNA binding transcription factors