PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0283s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 34755.9 Da PI: 4.6491 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 119 | 166 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 s ykGVr++k +g+W+AeIrd + + r++lg++ tae+A ka+ + ++ Kalax.0283s0016.1.p 119 SLYKGVRQRK-WGKWAAEIRDpF-----KgVRVWLGTYSTAEDASKAYQRKELE 166 57*******9.**********55.....45******************876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.93E-23 | 119 | 167 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-16 | 119 | 169 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-19 | 120 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-22 | 120 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-9 | 120 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.033 | 120 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MIKPLLVNPN LTVKSASDSA ASSPVGAAAR FSTKSVRKVR IICSDPYATE SSEDEDEYVI 60 KRSKRIVQEI QLPKLGNLRK ERNEELTPTS SGLYGDENKS CGKRRRMASK PAVRRPSGSL 120 YKGVRQRKWG KWAAEIRDPF KGVRVWLGTY STAEDASKAY QRKELEFKAM AAAIKSHTNL 180 STNEKTDVIA FSNETESGAS NTSSTSTLSE VAGTEKLSGP MEPVIVDGVR EDDTIDPLKT 240 SLLDQEISLG LEFDSMFMDA DLRPMFDDFG SVEDFDFLFD GVEDHTDTDL PEFDINIGST 300 ELAWIEESLN IACP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 118 | 184 | 3 | 70 | ATERF1 |
3gcc_A | 1e-14 | 118 | 184 | 3 | 70 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0283s0016.1.p |