PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0277s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 282aa    MW: 31698.2 Da    PI: 6.7831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0277s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-121461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W+++Ed +l d++      +W++I+++ g+ R +k+c++rw +yl
  Kalax.0277s0053.1.p 14 RGLWSPDEDRKLRDYIINNDRASWSSIPAKAGLQRNGKSCRLRWINYL 61
                         788*****************99************************97 PP
2Myb_DNA-binding48.22.4e-1567111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +T eE e  + ++++lG++ W+ I+++++ gRt++++k++w++ 
  Kalax.0277s0053.1.p  67 RGTFTLEERETVLTLHRMLGNK-WAEISKHLP-GRTDNEIKNYWHSN 111
                          899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.347961IPR017930Myb domain
SuperFamilySSF466894.4E-2512108IPR009057Homeodomain-like
SMARTSM007176.8E-81363IPR001005SANT/Myb domain
PfamPF002491.7E-101461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-191568IPR009057Homeodomain-like
CDDcd001675.72E-71761No hitNo description
PROSITE profilePS5129422.55562116IPR017930Myb domain
SMARTSM007179.8E-1566114IPR001005SANT/Myb domain
PfamPF002494.3E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2369114IPR009057Homeodomain-like
CDDcd001679.14E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGHKPNTQKV KHRRGLWSPD EDRKLRDYII NNDRASWSSI PAKAGLQRNG KSCRLRWINY  60
LRPGLKRGTF TLEERETVLT LHRMLGNKWA EISKHLPGRT DNEIKNYWHS NLKSRNNVKN  120
EVSQSPKAAQ QISSSMSSIC LQSLKTANNG SSLMGTSSMG TTACQPDTPA TKFASESLTP  180
KVLFAEWFSP DRSQQEFPDF LGGYGEHPND CLNPVTSFPD YLLEELSFEE GSFCSNFNAS  240
NGLNFPSPYE LQDLISGEEE FGTGNEMYNL DGSFYSENGL Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22141157107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.13e-51myb domain protein 18