PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0275s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32342 Da    PI: 5.9355
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0275s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.7e-1977129456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + ++++eq++eLe+ Fe  ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k
  Kalax.0275s0046.1.p  77 KKRLKREQVRELERSFELGNKLDPERKLQLAKSLGLQPRQVAIWFQNRRARWK 129
                          44589***********************************************9 PP
2HD-ZIP_I/II119.51.8e-3875165191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          e+k+rl++eqv+ LE+sFe  +kL+perK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy  Lk+++ + +++n++L++++++Lr+e
  Kalax.0275s0046.1.p  75 ERKKRLKREQVRELERSFELGNKLDPERKLQLAKSLGLQPRQVAIWFQNRRARWKTKQLEKDYGLLKKQFASAVADNDKLQSQNKQLRQE 164
                          69**************************************************************************************87 PP

          HD-ZIP_I/II  91 l 91 
                           
  Kalax.0275s0046.1.p 165 F 165
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2051132IPR009057Homeodomain-like
SuperFamilySSF466892.44E-2068133IPR009057Homeodomain-like
PROSITE profilePS5007116.90871131IPR001356Homeobox domain
SMARTSM003896.5E-1974135IPR001356Homeobox domain
CDDcd000865.47E-1676132No hitNo description
PfamPF000463.3E-1677129IPR001356Homeobox domain
PRINTSPR000316.3E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000316.3E-6111127IPR000047Helix-turn-helix motif
PfamPF021835.8E-8131170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSFFPHDFFF HPSNNEDQDH QGGMMFLKRS VSFTEMNAGF EEEEEDGVGN NQEDELSDEC  60
GGGGGGGGSG LGGGERKKRL KREQVRELER SFELGNKLDP ERKLQLAKSL GLQPRQVAIW  120
FQNRRARWKT KQLEKDYGLL KKQFASAVAD NDKLQSQNKQ LRQEFLKLQT LRSIDSVLEG  180
TASIKKEVPY HRTYSWSNNA SENSYEMNLL DSTRTPMISM NLFPSSFNRP ATISHLLETS  240
LRSDPQPSRI NQVVPDESLC NILCSMDDPT TGMWSWGEQH HFGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582RKKRLKRE
2123131RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256832.13e-73PREDICTED: homeobox-leucine zipper protein ATHB-13-like
TrEMBLA0A1U8A4W06e-72A0A1U8A4W0_NELNU; homeobox-leucine zipper protein ATHB-13-like
STRINGXP_010256832.11e-72(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-51homeobox 3