PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0274s0026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 33872.1 Da PI: 9.4455 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.4e-17 | 103 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ + +++++++G++ W++Iar+++ gRt++++k++w++++ Kalax.0274s0026.1.p 103 RGKMTPTEERIVLELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 148 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.53 | 80 | 97 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 83 | 109 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.72E-21 | 83 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.37 | 98 | 152 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-16 | 102 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 103 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.44E-11 | 105 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 110 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MNQRLHASFF WVWKTSDINN WEEQSKDRRG SQYDATRYQK GSMDRTRRLS AGKCCRLIWR 60 PPMGFCSKSF RFEGGGRQVL GLNRTGKSCR LRWLNYLHPG LKRGKMTPTE ERIVLELHAK 120 WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRVNY LSITSSESYS SSSNHTQDSL 180 SWSGKESFYD TGGLAAIAVT GKKQKEEEGE RIKMDEIWND IDISKDTITP LNDSYNQGLC 240 TYSCAPLVSP IWEYCPDPLW RMDEDDSKMP PPSNDYFQTC CEAGTYTLTG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-17 | 84 | 152 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-17 | 84 | 152 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-17 | 84 | 152 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-17 | 84 | 152 | 37 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018860260.1 | 1e-96 | PREDICTED: transcription factor MYB48-like isoform X1 | ||||
Swissprot | Q4JL84 | 6e-62 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A2I4HVR8 | 3e-95 | A0A2I4HVR8_JUGRE; transcription factor MYB48-like isoform X1 | ||||
STRING | XP_010426042.1 | 2e-80 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.2 | 4e-74 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0274s0026.1.p |
Publications ? help Back to Top | |||
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