PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0273s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 464aa    MW: 51761.1 Da    PI: 4.416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0273s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12279322755
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++Er+RR+++N+++ +Lr+l+Pk +      Kl+ a+iL  A++++k+Lq
  Kalax.0273s0044.1.p 279 IAERKRRKKLNERLYKLRSLVPKiS------KLDRASILGDAIDFLKELQ 322
                          79*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-132142IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.796272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-13274326No hitNo description
SuperFamilySSF474592.49E-16275337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-10278322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15279335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.0E-4375432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEQLRTLVSV HGWECCVVWR VNKDQRFIEW LDCCCAGAEN LPQEPAFSAS ECRDSVILHS  60
RTKACDLLAQ FPPFMLIEDS GVYAETLISN QPRWLHLSQS STSVDMEPQF ATRLLMPVPG  120
GLIELFAARP VSENQHIIDC IAEYSNLPPE KEANSISSTD MTAFYNEISL FGPKFESTNS  180
TDIFFDEFMN QLYNSSAKDG LLQGMDSMLV SDVSNTGVPV QGTGNDRGQQ GRDVMEEAGN  240
IEMGRSDSIS DCSDQLDEDD ADAIYRKKSG KGPQSKNLIA ERKRRKKLNE RLYKLRSLVP  300
KISKLDRASI LGDAIDFLKE LQKQKKDLED ELQQQQSDDE YHEDTNPFLG QTEDTMDQDQ  360
LEAQVEVSKI DGTDALFIKL LCENKPGSFV GVLEALDHLG LEVTNVNINT HETFVSNVLL  420
VQGKEGSCVM VEADRVKDSL LSTTRNSIPT GSLRRPNLAA RQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265286RKKSGKGPQSKNLIAERKRRKK
2280287ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022953123.11e-114transcription factor ABORTED MICROSPORES-like isoform X2
STRINGEOX976291e-112(Theobroma cacao)
STRINGcassava4.1_029776m1e-113(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-78bHLH family protein