PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0268s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 812aa MW: 90360.1 Da PI: 5.9355 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 114.8 | 4.6e-36 | 151 | 226 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCe+d+se+k yh+rh+vC ++++a++v+++g+++r+CqqC++fh ls+fD+ekrsCrr+L++hn+rrr+k Kalax.0268s0017.1.p 151 RCQVPGCEVDISELKGYHKRHRVCLKCANASAVALDGESKRYCQQCGKFHILSDFDDEKRSCRRKLERHNNRRRRK 226 6************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-27 | 148 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.162 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.1E-33 | 150 | 229 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-27 | 152 | 226 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 812 aa Download sequence Send to blast |
MEPSSPKPQP LKPDSQSQIL PQSESELASS SHRPKAAGMD LGFPAMEESE STTLFDWGDL 60 LDFTVDEDQF ALPSPSPFGS DEAPVAGFEE SADRVRKRDP KLTCENFLAG RVPCACPEMD 120 ALLAEEEELR GTGKKRARTV RSAAAAGVVA RCQVPGCEVD ISELKGYHKR HRVCLKCANA 180 SAVALDGESK RYCQQCGKFH ILSDFDDEKR SCRRKLERHN NRRRRKLTNA KGPTEDDIPG 240 DPLVEEFGCD VEAGKAIETL TTKTTPDEAL VRSEDVLIAN TCSTFSSQDT RSDSPGSDET 300 NMDGVKERSR YGPSSSNGDN KSAFSSVCPT GRISFKLYDW NPAEFPRRLR HQIFQWLASM 360 PVELEGYIRP GCTILTVFLS MPKFMWVELF KDPASQLQDF ISAPGRLLSG KGTIHVYLDD 420 MRFLIARDGT FVKKVLTDVH APKLHYVHPT FFEAGKPMEF VACGSNLLQQ KFRFLVSFQE 480 KYVANECYLP FSPGHSELES TCHFNHQKYK IYAPLIDSDA FGPAFVEVEN QSGLSNYIPV 540 LIGDAEVCAE MERIQQSCVR SFISESSVCE PDNCEVYEAI HSAVSEFVLD IAWLLKKPAS 600 ESLQDNLTSS QIKRYDSVLS HLLLNDSKVI LDRVLKSLSI RISNAEKSSP GYATCEDGIR 660 LLQKRMDQAS NTLRLKRSGL TSPSKNSFSS DALENNIYYE RTSAIHIDEE DTNSSPEHKS 720 VALEDSTRTQ RSETVPLLCV DDSVKTKHMD KWPRQSCSAI ISSTRIVPHT RTTFSLAAIA 780 LVCFGVCAVM IHPDKVGQFA LTVRQCLFDR S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-40 | 147 | 232 | 1 | 86 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 224 | RRKLERHNNRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277039.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
TrEMBL | F6HDJ0 | 0.0 | F6HDJ0_VITVI; Uncharacterized protein | ||||
STRING | VIT_05s0020g02160.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0268s0017.1.p |