PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0268s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 326aa    MW: 35601.1 Da    PI: 6.6964
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0268s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-173280355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Kalax.0268s0006.1.p 32 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 80
                         56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-333194IPR001471AP2/ERF domain
CDDcd000184.04E-293187No hitNo description
PROSITE profilePS5103220.4813188IPR001471AP2/ERF domain
PRINTSPR003672.1E-73243IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-203290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-283288IPR001471AP2/ERF domain
PfamPF008478.6E-113480IPR001471AP2/ERF domain
PRINTSPR003672.1E-75470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAQTFAILQR NTSPVQSSER RGKRKQAEPG RFLGVRRRPW GRYAAEIRDP TTKERHWLGT  60
FDTAHEAALA YDRAALSMKG TQARTNFLYS NNTTFHSLLT TPFDALIPSS QFLITTTHSM  120
KPQQQPSISQ NILIPCQTNQ WQHSRDHSLH GAAATAQPES DMCSGETSES QQMSESYDNA  180
AGAGFFFSSS ETNSGYLDSI VPDSLLKPPS SPGSTNSKYT HLNSSIYDRN SGATHHQMHS  240
HYCDNNVFQM DSVPGGGYGY QDTTCNCNGF DKSELSAMVN NPLMVEDGCM GALYPMIGNP  300
AGSSSSYQAN PSASHFGDVG SYSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1927921076Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908918.13e-93ethylene-responsive transcription factor ERF086
TrEMBLA0A2N9J1424e-91A0A2N9J142_FAGSY; Uncharacterized protein
STRINGcassava4.1_028754m6e-87(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-53ERF family protein