PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0267s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 404aa MW: 44742.4 Da PI: 7.4266 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Kalax.0267s0052.1.p 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++d+++ lG++ W+ Ia+ ++ gRt++++k+ w++ Kalax.0267s0052.1.p 67 RGAFSPQEETLIIDLHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.006 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.44E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.862 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.0E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-8 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 404 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SPQEETLIID LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPDTHKPLS SDPVKASLDT HPTGKQQQSS LFDAENKQQS NTREFFLDRF VVSANTETAS 180 STVTVAAAAA GCKPAADVLG YFSFQQLSNN HSYHGSSAEH DSSNTLCFNP NDHQFSSNPV 240 PSMFSSISSS FLTAPTATVA LPSSNSNSNN SSSIGSYSMN HNASVQNWDS HSFSWGPSDC 300 GKSNKDDQQQ QQLDGGENED CKWSEYLQTT APFLLAGTSY PNLHAMCHST DIIKPETHCH 360 ESNNSTTASP ASLLWHHQQQ QSLSDAYSKQ DFHRLAVAFE PSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276091.1 | 1e-118 | PREDICTED: transcription factor MYB86 | ||||
TrEMBL | A0A438GYK1 | 1e-117 | A0A438GYK1_VITVI; Transcription factor MYB61 | ||||
TrEMBL | A5C8P8 | 1e-117 | A5C8P8_VITVI; Uncharacterized protein | ||||
TrEMBL | F6I4I7 | 1e-117 | F6I4I7_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0060g00240.t01 | 1e-118 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01680.3 | 9e-89 | myb domain protein 55 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0267s0052.1.p |