PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0266s0028.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 309aa MW: 33625.2 Da PI: 9.618 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.2 | 1.4e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ Kalax.0266s0028.2.p 5 KQKWTAEEESALKAGVVKHGAGKWRTILKDPEfssvlYLRSNVDLKDKWRN 55 79***********************************88***********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.528 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-15 | 2 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-13 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.38E-19 | 6 | 56 | No hit | No description |
SMART | SM00526 | 1.0E-15 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 9.8E-17 | 118 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 23.724 | 120 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 2.5E-15 | 122 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 2.2E-9 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MGAPKQKWTA EEESALKAGV VKHGAGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNMSVMA 60 NGWGSREKAR LALKRMQSAP KPGENQMLLT YGPHSEDESV DLKPLPSPSG AQQASGSKRT 120 FTRLDNLIME AINELKEPGG SNKTSIGNYI EEQYCAPPNF KRLLSAKLKL LVSSGKLVKV 180 KRKYRIRTSQ VSPESKNSPH PSSNLLEGRS SLPSKIDYDN FNLSDIKTTS RAEIDLELAK 240 MRNMTAEEAA IAAARAVAEA ETAIAEAEEA AREAEAAEAD AEAAMAFAEA ARKTLKGRSD 300 IKTVGACC* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002266866.2 | 1e-111 | PREDICTED: telomere repeat-binding factor 1 | ||||
Refseq | XP_010647910.1 | 1e-111 | PREDICTED: telomere repeat-binding factor 1 | ||||
Swissprot | Q8VWK4 | 9e-93 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | F6H645 | 1e-108 | F6H645_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0091g01030.t01 | 1e-109 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49950.3 | 5e-77 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0266s0028.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|