PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0265s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 335aa    MW: 37389.6 Da    PI: 6.1126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0265s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13151198355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h ++Er+RR+++N+++  L  ++P +     +K++Ka++Le+A++++k+Lq
  Kalax.0265s0020.1.p 151 ENHIKAERKRREKLNQRIIALSAVIPGL-----TKMDKATVLEEATKFVKQLQ 198
                          689************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16146208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-13146202No hitNo description
PROSITE profilePS5088815.523148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDQDQIFTSQ WMVNSHADLS GPIPMEAAFP DALQHSNLLF DYPLPPIFGT TMNDFQSNNP  60
VEHLTTDTWR SLHVSNSDSA ADAVSFLNSA WPNPTGVAWR KNHCYDNQVQ QFPNNEYTIW  120
NENYVSKAGP EAKSKAIRNI SAATRSSEAE ENHIKAERKR REKLNQRIIA LSAVIPGLTK  180
MDKATVLEEA TKFVKQLQEQ IKMLEKQTKS GTMIESAVVV KKTLLVINDD NITGFSNESS  240
FIERTLPDES LPEIEARFCD MKVLIRVHCD RKKGVAEKIL SEIEKLHMTV LNSSVLAFGS  300
AAINVAVIAK MNPECSMAET ELVKTLCVAL KSFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-49bHLH family protein