PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0264s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 370aa    MW: 40979.9 Da    PI: 6.9394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0264s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-1556103148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W++eEd++l+++  + G g+W+ +ar  g+ R++k+c++rw +yl
  Kalax.0264s0002.1.p  56 KGLWSPEEDDKLINYMLRNGQGCWSDVARNAGLQRCGKSCRLRWINYL 103
                          678*******************************************97 PP
2Myb_DNA-binding53.65.1e-17109152146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++
  Kalax.0264s0002.1.p 109 RGAFSPQEEELIVQLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 152
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-2348106IPR009057Homeodomain-like
PROSITE profilePS5129415.89751103IPR017930Myb domain
SuperFamilySSF466893.79E-2854150IPR009057Homeodomain-like
SMARTSM007172.5E-1155105IPR001005SANT/Myb domain
PfamPF002494.7E-1456103IPR001005SANT/Myb domain
CDDcd001678.44E-1059103No hitNo description
PROSITE profilePS5129426.003104158IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-26107159IPR009057Homeodomain-like
SMARTSM007173.3E-16108156IPR001005SANT/Myb domain
PfamPF002491.5E-15109152IPR001005SANT/Myb domain
CDDcd001671.00E-11111151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MIFGIHALIP IIRSSSSAAM RKPAADSPFT PPPPSSSSPP PSSSSSMKSG NGKLRKGLWS  60
PEEDDKLINY MLRNGQGCWS DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI  120
VQLHSLLGNR WSQIAARLPG RTDNEIKNFW NSTIKKRLKN ATSHNNKPPS ASDDDHQFSN  180
LGSSTGFMCM QRNHQHHLIH QSSNNTMFMN TAATGSYMDH SSSSGSSSSP SMALNHINSN  240
PNSLLMSCDM IFDDQSLVDI YDFGEGLVEL YVPPLDTINI DSTNTNMMSS FNNNGNILVE  300
GFKQVDQRHI MEAAARPNCR YTCGSSGVQE KQLSCEFGET NIRLGEWDLE ELMRSSSEIA  360
YSLPHLDLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28541585108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278278.18e-82transcription factor MYB46
TrEMBLA0A151UEN02e-78A0A151UEN0_CAJCA; Transcription factor MYB46
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-68myb domain protein 46