PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0263s0049.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 448aa    MW: 49328.8 Da    PI: 9.7952
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0263s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093043411954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Kalax.0263s0049.1.p 304 FEHflHPYPSDTDKNLLAQRTGLSRNQVSNWFINARVR 341
                          554459******************************88 PP
2BELL70.62.8e-23177240770
                 BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiae 70 
                          +k + L+ ll+e+ kr kqy++ lq v++sFe+v glg+a+pYts+Al +++++FrcLk  i e
  Kalax.0263s0049.1.p 177 NKDSGLILLLDELFKRCKQYCQHLQSVVASFETVPGLGNAAPYTSFALGTMAQQFRCLKKTIFE 240
                          68889*******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.2E-26122240IPR006563POX domain
PfamPF075261.0E-25127238IPR006563POX domain
SMARTSM003891.4E-7285349IPR001356Homeobox domain
CDDcd000861.64E-10285345No hitNo description
Gene3DG3DSA:1.10.10.602.4E-25288349IPR009057Homeodomain-like
SuperFamilySSF466892.4E-15289349IPR009057Homeodomain-like
PfamPF059202.7E-18302341IPR008422Homeobox KN domain
PROSITE profilePS5007111.774304345IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSLSLRQMES STSSVPPPPK RHKLPLHPPP AAITISPPPP PHDRHPTDSL RNLSSTRQLT  60
PLGSTPFSTS SLCSGPVRPR DLARGGLSLS LSSDRPRCIG RDSPVRAHEA WRGSAVPLGP  120
FTGYASILSR SRFLKPAQDL LDELCGVDSR PVNRSSFHGF CDSAGIVSMD LDDVAGNKDS  180
GLILLLDELF KRCKQYCQHL QSVVASFETV PGLGNAAPYT SFALGTMAQQ FRCLKKTIFE  240
RARVAGEAIG YKGVNSLTLG CREPHQSSEN WKPVQTSPSL QHPVWRSQRG LPAHAVTVFK  300
NWLFEHFLHP YPSDTDKNLL AQRTGLSRNQ VSNWFINARV RLWKPLVEEI HTLDEQRGQP  360
ADPKSSKRRT PTLSFDHPTR DFDLLMLPGQ QRQERRNPSC SDSYTDNLST SASKHSRTEE  420
NIGISLALGL QQESGLGNPA SRGAFNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-14291349563Homeobox protein Meis2
4xrm_B3e-14291349563Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362368PKSSKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGVIT_13s0019g02450.t011e-83(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-65TALE family protein