PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0263s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 364aa MW: 41443.1 Da PI: 8.1993 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.4 | 4.7e-24 | 54 | 133 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e++ Li++rre++ +++ k++k+lWe++s+kmr++gf rsp++C++kw+nl k++k+++ +++++ +++++++le Kalax.0263s0008.1.p 54 WSQDEIRSLINLRREVDGLFNTCKSNKHLWEQISAKMRKKGFDRSPNMCTDKWRNLLKEFKRVRCQDGGN-----GKMSWYKELE 133 ****************************************************************999984.....2456788886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.722 | 46 | 110 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 47 | 111 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.53E-5 | 50 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-6 | 50 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.56E-26 | 52 | 117 | No hit | No description |
Pfam | PF13837 | 1.3E-19 | 53 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MYVSEKPRPT DVYKRVGRVM MVEPISVSPR MMTTGESSGE DHEMKAPKKR AETWSQDEIR 60 SLINLRREVD GLFNTCKSNK HLWEQISAKM RKKGFDRSPN MCTDKWRNLL KEFKRVRCQD 120 GGNGKMSWYK ELEELLRNRS SRHAAPAKVV DSYMHLDDKV VENDVITYGP AEGSRPAVNL 180 ETQLDHDGDA LPIPITPVDP VIANGVPPWS WRETPGTGEQ PLPYGGRVIS VKWGDYTRRI 240 GIDGSTEAIK EAIKSAFRLR SKRAFWLEDE HQIIRTLDRN MPLGNYTLYL DEGITIKICL 300 CGGADQIIIR TEEKTFYTEE HFHVYLSRRG LTGLSELNNG FRSIDALDDL RPGGAYQGVR 360 IID* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 1e-39 | 48 | 131 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248872.1 | 1e-165 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 1e-145 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A1U7ZCD8 | 1e-164 | A0A1U7ZCD8_NELNU; trihelix transcription factor GT-1-like | ||||
STRING | XP_010248872.1 | 1e-165 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-148 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0263s0008.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|