PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0262s0033.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 259aa    MW: 28496 Da    PI: 7.7703
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0262s0033.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1679130155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Kalax.0262s0033.2.p  79 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFPTEEEAAEAYDIAAIKFRG 130
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.088144IPR001471AP2/ERF domain
SMARTSM003806.1E-8450IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-10746IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-10845IPR001471AP2/ERF domain
CDDcd000185.29E-121246No hitNo description
SuperFamilySSF541711.11E-1879140IPR016177DNA-binding domain
CDDcd000182.33E-2579140No hitNo description
PfamPF008471.0E-1079130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-1980139IPR001471AP2/ERF domain
SMARTSM003801.2E-3280144IPR001471AP2/ERF domain
PROSITE profilePS5103219.63880138IPR001471AP2/ERF domain
PRINTSPR003672.5E-58192IPR001471AP2/ERF domain
PRINTSPR003672.5E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
WALHWTISES AVYLGGYDKE DKAARAYDLA ALKYWGPTAV TNFPVSNYAK ELEEMTSMTK  60
QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FPTEEEAAEA  120
YDIAAIKFRG TNAVTNFEMS RYDVAAITKA TLPIGGAVRS LKSPPESEVS LALNEPRLQN  180
PTNNISFSLT QPLSAIPCGV PFDAVPSLYQ HNLYHQLQSS HAAVMAVPEP QTSIGTPTGP  240
INFLPYSGDF YAWPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036659.11e-113AP2-like ethylene-responsive transcription factor AIL6 isoform X3
SwissprotQ6J9N83e-86AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A061DHK61e-108A0A061DHK6_THECC; AP2-like ethylene-responsive transcription factor AIL6
STRINGEOX919251e-108(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.14e-88AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]