PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0258s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 398aa    MW: 43917.5 Da    PI: 4.6743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0258s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-20119168255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++G+r+++ +g+W+AeIrdpse     r++lg+f +aeeAa+a+++a+++++g
  Kalax.0258s0013.1.p 119 QFRGIRQRP-WGKWAAEIRDPSE---GVRVWLGTFNSAEEAARAYDEAARRIRG 168
                          69*******.**********976...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.17E-31119177No hitNo description
SuperFamilySSF541711.63E-21119177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-32119178IPR001471AP2/ERF domain
SMARTSM003806.5E-38119182IPR001471AP2/ERF domain
PROSITE profilePS5103223.485119176IPR001471AP2/ERF domain
PfamPF008471.3E-12120168IPR001471AP2/ERF domain
PRINTSPR003671.5E-10120131IPR001471AP2/ERF domain
PRINTSPR003671.5E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MCGGAIISDF IPSASRSRRL TADFLWPAAG AKKTGRFAKP APKTEVIDVD DDEDEDDDFE  60
ADFKGFRDEE DDDAAVDVKA FPFTASKSAA SRHGSLAAKK AQEFNGQAEK TANRKRKNQF  120
RGIRQRPWGK WAAEIRDPSE GVRVWLGTFN SAEEAARAYD EAARRIRGKK AKVNFPDESP  180
AAERKTVAKT NARKVHPKVK LNKAKVEANQ AFGFMNNTGL ENSFDLDFMD QKPTVNELGY  240
AKNSFPVVEE SGMKPFTSSE AANVYFSSDH SSNTLDCSDY GWGKKHPATP EVSSLLSTTI  300
GVDENQFTDA ENPKKKLKSN QEEAVPVESN QAQNLSDMLS DFETEMKFFE IPYPEECNWD  360
TSIGGGFLNG DISQDVGNEG MDLWSFDDMQ PMAGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20119176563ATERF1
3gcc_A4e-20119176563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312318PKKKLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280975.11e-131ethylene-responsive transcription factor RAP2-12-like
TrEMBLD5L1391e-130D5L139_MALDO; AP2 domain class transcription factor
STRINGXP_006426779.11e-128(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-61related to AP2 12