PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0256s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8067.6 Da    PI: 10.7197
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0256s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA126.39.7e-40975470
                 S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                         a++  +G+n Glivllvv gll++flvgny+lyvyaqk+lPPrkkkPvskkklkre+lkqGv++PGe
  Kalax.0256s0013.1.p  9 ANAGGQGFNAGLIVLLVVVGLLVTFLVGNYVLYVYAQKTLPPRKKKPVSKKKLKRERLKQGVSAPGE 75
                         556669************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046897.7E-381375IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MDDDLGAKAN AGGQGFNAGL IVLLVVVGLL VTFLVGNYVL YVYAQKTLPP RKKKPVSKKK  60
LKRERLKQGV SAPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.21e-27DNA-binding protein S1FA
RefseqXP_024026346.11e-27DNA-binding protein S1FA
SwissprotQ423371e-12S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA33e-26W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.16e-27(Morus notabilis)