PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0255s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 335aa    MW: 36059.4 Da    PI: 9.9605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0255s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20137186255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa+a+++a+++++g
  Kalax.0255s0029.1.p 137 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAARAYDEAALRFRG 186
                          7********.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.818137194IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22137195IPR016177DNA-binding domain
PfamPF008474.6E-14137186IPR001471AP2/ERF domain
SMARTSM003801.7E-37137200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-33137195IPR001471AP2/ERF domain
PRINTSPR003671.0E-11138149IPR001471AP2/ERF domain
CDDcd000182.23E-14145196No hitNo description
PRINTSPR003671.0E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MLSDYSQARE MSAMVTALTH VVSGQRPTSE QWLYPTGPSY AASDRQSGFP SWSPSGSSSG  60
QKRSRMEQQS RPSAATPPDD KNTVQRHHRI STADFASSSS PPPSSAAAAV SATQATQMPT  120
PGSATTAEEA GERRRRRYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFETA EAAARAYDEA  180
ALRFRGNRAK LNFPENVRSM PAPPSASTRV PISSGPATIR PPDYARPQLQ FQRQQELGDY  240
AQYSQLLQGG SSSTSLLDQF ALSHLQPPTT TTAATAFGSS FSGAYPQTLG NEQSEWGFHG  300
WSGDAGGGSS GREVLSKPSP PTWTEENQYP NSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24136199468ATERF1
3gcc_A6e-24136199468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-18ERF family protein