PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0255s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 627aa    MW: 69516.4 Da    PI: 6.2252
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0255s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.82e-3071155187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++lk+plW++vs+km e g++rs+k+Ckek+en+ k++k++keg++++   + +t+++fdqlea
  Kalax.0255s0022.1.p  71 RWPRQETLALLKIRSDMDVAFRDSNLKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKEGRSSK--SDGKTYRFFDQLEA 155
                          8********************************************************************97..45567*******85 PP
2trihelix92.54.2e-29429513186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW+k ev +L+++r++ e +++++  k+p Wee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpy++ l+
  Kalax.0255s0022.1.p 429 RWPKAEVETLVKLRTSFEIKYQENGPKGPFWEEISAGMRSLGYNRNAKRCKEKWENINKYFKKVKESNKQR-PEDSKTCPYYHLLD 513
                          8********************************************************************98.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.91164128IPR017877Myb-like domain
SMARTSM007171.6E-468130IPR001005SANT/Myb domain
PfamPF138378.7E-2070156No hitNo description
CDDcd122032.35E-2470135No hitNo description
PROSITE profilePS500907.213422486IPR017877Myb-like domain
SMARTSM007170.0038426488IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-4427485IPR009057Homeodomain-like
PfamPF138372.8E-20428514No hitNo description
CDDcd122033.69E-25428493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MMLGGGGGGD GASMLVSSAG GGGDNTASNN NNSSVGGVVF GEDQEIHNST SGNNNMMMME  60
DGDRNNSGGN RWPRQETLAL LKIRSDMDVA FRDSNLKGPL WDDVSRKMGE LGYHRSAKKC  120
KEKFENVYKY HKRTKEGRSS KSDGKTYRFF DQLEALDQLQ PFQMPPPPVQ QPPQVSHSKA  180
PPFLMQPPPA LQTPTTISFS QHQPCTNNIT NSNPITTTAP ITPVPTNPTI ISPNYQSGAT  240
NFMVSTSSST SSDDLQQRRR TGKKRKWKDF FEKLMRDVVD KQEELQNKFL RSIEMRERER  300
SMREEAWRME EMARLNREHE VLVQERAAAA AKDAAVIAFL QKIAGQQPQT QPQPQLQPLP  360
PQPKQQPPPP PPPHTIQLNP STTPPPPQRQ PPPQQPQPLN VMKPDSNAAG AQNNLAIVCG  420
STQPASSSRW PKAEVETLVK LRTSFEIKYQ ENGPKGPFWE EISAGMRSLG YNRNAKRCKE  480
KWENINKYFK KVKESNKQRP EDSKTCPYYH LLDTIYKEKK GGGGGGGNIN SYLPPHSTNS  540
LMAPPLMVQP EQQWPLAPQA QARHQNEQGE DQDDMLDEDE LDEDMEDEEE EGDEEDNNGG  600
TYEVVATASN GAPPAATSSL GTTAVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256265QRRRTGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314480.11e-168trihelix transcription factor GT-2-like
TrEMBLA0A3Q7JB431e-167A0A3Q7JB43_SOLLC; Uncharacterized protein
STRINGSolyc12g056510.1.11e-167(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-62Trihelix family protein